SMTL ID : 3he0.1 (1 other biounit)

The Structure of a Putative Transcriptional Regulator TetR Family Protein from Vibrio parahaemolyticus.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.28, F.29, Q.30, R.109 Chain B: R.109 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.29, A:Q.30, A:Q.30 Salt bridges: A:R.109, B:R.109 SO4.2: 3 residues within 4Å: Chain A: R.13, N.65, K.68 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.13 SO4.3: 7 residues within 4Å: Chain A: R.128, V.134, D.135, N.152, E.153, S.156 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.153, A:S.156 Salt bridges: A:R.128 SO4.7: 2 residues within 4Å: Chain B: R.69, L.103 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.69 SO4.8: 6 residues within 4Å: Chain B: R.128, V.134, D.135, N.152, E.153, S.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.156 Salt bridges: B:R.128 SO4.9: 3 residues within 4Å: Chain B: K.142, P.149 Ligands: GOL.11 No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: V.74, I.95, F.131, S.156, E.161, V.164 Ligands: SO4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.156 GOL.5: 4 residues within 4Å: Chain A: K.142, P.149, L.150, D.151 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.142, A:D.151 Water bridges: A:K.142, A:N.152, A:N.152 GOL.10: 2 residues within 4Å: Chain B: E.56, R.120 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.56, B:R.120, B:R.120 GOL.11: 2 residues within 4Å: Chain B: E.143 Ligands: SO4.9 No protein-ligand interaction detected (PLIP) GOL.12: 5 residues within 4Å: Chain B: V.74, I.95, F.131, S.156, E.161 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.156

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: R.50, Y.51 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cuff, M.E. et al., The Structure of a Putative Transcriptional Regulator TetR Family Protein from Vibrio parahaemolyticus. TO BE PUBLISHED

Release Date

2009-07-07

Peptides

Transcriptional regulator, TetR family: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional regulator, TetR family

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