SMTL ID : 3hea.2 (1 other biounit)

The L29P/L124I mutation of Pseudomonas fluorescens esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

13 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: L.137, F.140, A.141, K.144, T.196, A.199, E.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.144, A:E.200 GOL.2: 7 residues within 4Å: Chain A: S.1, Y.12, F.13, K.14, D.15 Chain B: D.61, Q.62 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.1, A:Y.12, A:Y.12, A:D.15, A:D.15, B:D.61, B:D.61, B:Q.62 GOL.3: 7 residues within 4Å: Chain A: L.30, M.34, Y.163, V.175, Q.178, T.179, I.182 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.163, A:Q.178 Water bridges: A:E.36, A:E.36, A:Y.37, A:Q.178 GOL.7: 7 residues within 4Å: Chain B: S.1, Y.12, F.13, K.14, D.15 Chain C: D.61, Q.62 8 PLIP interactions: 5 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:S.1, B:Y.12, B:Y.12, B:D.15, B:D.15, C:D.61, C:Q.62 Water bridges: C:Q.62 GOL.8: 7 residues within 4Å: Chain B: L.137, F.140, A.141, K.144, T.196, A.199, E.200 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.144, B:T.196, B:E.200 Water bridges: B:T.196 GOL.9: 8 residues within 4Å: Chain B: L.30, M.34, Y.163, V.175, Q.178, T.179, I.182, V.255 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.163, B:V.175, B:Q.178 Water bridges: B:E.36, B:Q.178 GOL.10: 6 residues within 4Å: Chain B: K.6, D.74, A.77, Q.78, E.81, H.107 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.74, B:E.81 Water bridges: B:R.106 GOL.11: 6 residues within 4Å: Chain B: V.135, V.139, F.143, Q.223, I.224, P.226 No protein-ligand interaction detected (PLIP) GOL.15: 7 residues within 4Å: Chain A: D.61, Q.62 Chain C: S.1, Y.12, F.13, K.14, D.15 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:S.1, C:Y.12, C:Y.12, C:D.15, C:D.15, A:D.61, A:Q.62 Water bridges: A:Q.62 GOL.16: 7 residues within 4Å: Chain C: L.137, F.140, A.141, K.144, T.196, A.199, E.200 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.144, C:E.200 GOL.17: 7 residues within 4Å: Chain C: L.30, M.34, Y.163, V.175, Q.178, T.179, I.182 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:Y.163, C:V.175, C:Q.178 Water bridges: C:E.36, C:Y.37, C:Q.178 GOL.18: 5 residues within 4Å: Chain C: V.245, Y.246, K.247, H.257, Q.260 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.247, C:H.257, C:Q.260 GOL.19: 6 residues within 4Å: Chain C: F.125, V.135, F.143, Q.223, I.224, P.226 No protein-ligand interaction detected (PLIP)

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: D.70, R.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.70 Salt bridges: A:R.106 SO4.5: 4 residues within 4Å: Chain A: V.245, Y.246, K.247, Q.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.245, A:K.247, A:Q.260 SO4.12: 4 residues within 4Å: Chain B: V.245, Y.246, K.247, Q.260 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.245, B:K.247, B:Q.260 SO4.13: 2 residues within 4Å: Chain B: D.70, R.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.70 Salt bridges: B:R.106 SO4.20: 1 residues within 4Å: Chain C: R.106 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.106

3 x EEE: ETHYL ACETATE(Covalent)

EEE.6: 8 residues within 4Å: Chain A: G.27, W.28, F.93, S.94, M.95, F.198, I.224, H.251 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.93, A:F.198, A:I.224 Hydrogen bonds: A:W.28, A:M.95 Salt bridges: A:H.251 EEE.14: 9 residues within 4Å: Chain B: G.27, W.28, F.93, S.94, M.95, F.162, F.198, I.224, H.251 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:F.93, B:F.162, B:F.198, B:I.224 Hydrogen bonds: B:W.28, B:M.95 Salt bridges: B:H.251 EEE.21: 8 residues within 4Å: Chain C: G.27, W.28, F.93, S.94, M.95, F.198, I.224, H.251 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:F.93, C:F.198, C:I.224 Hydrogen bonds: C:W.28, C:M.95 Salt bridges: C:H.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin de, L.T. et al., Switching catalysis from hydrolysis to perhydrolysis in Pseudomonas fluorescens esterase. Biochemistry (2010)

Release Date

2010-03-23

Peptides

Arylesterase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Arylesterase

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