SMTL ID : 3hec.1

P38 in complex with Imatinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x STI: 4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE(Non-covalent)

STI.1: 18 residues within 4Å: Chain A: V.26, A.47, K.49, E.67, L.70, L.71, I.80, L.100, T.102, L.104, M.105, I.142, I.143, H.144, D.146, L.163, D.164, F.165 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.26, A:L.71, A:L.71, A:I.80, A:I.80, A:L.100, A:T.102, A:D.164, A:F.165 Hydrogen bonds: A:E.67, A:T.102, A:M.105, A:D.164 Water bridges: A:K.49 Salt bridges: A:D.164

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 14 residues within 4Å: Chain A: P.187, E.188, L.191, W.193, H.195, Y.196, N.197, L.232, L.242, K.245, L.287, D.288, S.289, D.290 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.187, A:E.188, A:W.193, A:W.193, A:L.232, A:L.242, A:L.287 Hydrogen bonds: A:H.195, A:N.197, A:D.288, A:S.289, A:D.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Namboodiri, H.V. et al., Analysis of imatinib and sorafenib binding to p38alpha compared with c-Abl and b-Raf provides structural insights for understanding the selectivity of inhibitors targeting the DFG-out form of protein kinases. Biochemistry (2010)

Release Date

2009-11-10

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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