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SMTL ID : 3hee.1
Structural study of Clostridium thermocellum Ribose-5-Phosphate Isomerase B and ribose-5-phosphate
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
homo-dimer
Ligands
2 x
R5P
:
RIBOSE-5-PHOSPHATE
(Non-covalent)
R5P.1:
13 residues within 4Å:
Chain A:
D.8
,
H.9
,
G.10
,
Y.42
,
C.65
,
G.66
,
T.67
,
G.70
,
R.109
Chain B:
H.98
,
N.99
,
R.132
,
R.136
18
PLIP interactions
:
8 interactions with chain B
,
10 interactions with chain A
Hydrogen bonds:
B:H.98
,
B:N.99
,
A:D.8
,
A:G.66
,
A:T.67
,
A:T.67
,
A:G.70
Water bridges:
B:R.136
,
B:R.136
,
B:R.136
,
A:R.109
,
A:R.109
,
A:R.109
Salt bridges:
B:H.98
,
B:R.132
,
B:R.136
,
A:H.9
,
A:R.109
R5P.2:
13 residues within 4Å:
Chain A:
H.98
,
N.99
,
R.132
,
R.136
Chain B:
D.8
,
H.9
,
G.10
,
Y.42
,
C.65
,
G.66
,
T.67
,
G.70
,
R.109
16
PLIP interactions
:
8 interactions with chain B
,
8 interactions with chain A
Hydrogen bonds:
B:D.8
,
B:G.66
,
B:T.67
,
B:T.67
,
B:G.70
,
A:H.98
,
A:N.99
Water bridges:
B:R.109
,
A:R.136
,
A:R.136
,
A:R.136
Salt bridges:
B:H.9
,
B:R.109
,
A:H.98
,
A:R.132
,
A:R.136
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Jung, J. et al., Crystal structure of Clostridium thermocellum ribose-5-phosphate isomerase B reveals properties critical for fast enzyme kinetics. Appl.Microbiol.Biotechnol. (2011)
Release Date
2009-11-10
Peptides
Ribose-5-phosphate isomerase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Ribose-5-phosphate isomerase
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