SMTL ID : 3hfa.1

Crystal Structure of Mycobacterium Tuberculosis Proteasome open-gate mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-14-14-mer

Ligands

58 x DMF: DIMETHYLFORMAMIDE(Non-covalent)

DMF.1: 5 residues within 4Å: Chain A: Y.35, I.36, A.56, R.57, A.60 Ligand excluded by PLIP DMF.2: 5 residues within 4Å: Chain A: R.19, G.183, P.184, D.185 Ligands: DMF.11 Ligand excluded by PLIP DMF.3: 3 residues within 4Å: Chain B: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.4: 3 residues within 4Å: Chain B: R.221 Chain C: V.187, R.188 Ligand excluded by PLIP DMF.5: 6 residues within 4Å: Chain C: A.77, I.80, N.81, W.129 Chain F: R.57 Chain T: D.82 Ligand excluded by PLIP DMF.6: 6 residues within 4Å: Chain C: R.57 Chain I: A.77, I.80, N.81, W.129 Chain O: D.82 Ligand excluded by PLIP DMF.7: 4 residues within 4Å: Chain D: Y.172, D.176, G.183, P.184 Ligand excluded by PLIP DMF.8: 6 residues within 4Å: Chain D: H.65, Y.66, L.69, E.70 Chain Z: R.77, Y.81 Ligand excluded by PLIP DMF.9: 6 residues within 4Å: Chain D: A.77, I.80, W.129 Chain L: R.57 Chain Z: Y.81, D.82 Ligand excluded by PLIP DMF.10: 5 residues within 4Å: Chain E: A.77, I.80, W.129 Chain J: R.57 Chain X: D.82 Ligand excluded by PLIP DMF.11: 5 residues within 4Å: Chain F: Y.172, A.175, D.176, G.183 Ligands: DMF.2 Ligand excluded by PLIP DMF.12: 4 residues within 4Å: Chain A: R.221 Chain C: K.151 Chain F: V.187, R.188 Ligand excluded by PLIP DMF.13: 7 residues within 4Å: Chain F: A.77, I.80, N.81, W.129 Chain G: R.57 Chain U: Y.81, D.82 Ligand excluded by PLIP DMF.14: 6 residues within 4Å: Chain F: D.38, D.39, Y.40, P.73, K.79, I.109 Ligand excluded by PLIP DMF.15: 6 residues within 4Å: Chain D: R.57 Chain G: A.77, I.80, N.81, W.129 Chain R: D.82 Ligand excluded by PLIP DMF.16: 4 residues within 4Å: Chain G: Y.172, A.175, D.176, G.183 Ligand excluded by PLIP DMF.17: 3 residues within 4Å: Chain H: Y.172, A.175, D.176 Ligand excluded by PLIP DMF.18: 5 residues within 4Å: Chain A: R.57 Chain H: A.77, I.80, N.81, W.129 Ligand excluded by PLIP DMF.19: 5 residues within 4Å: Chain H: A.60, V.61, E.64 Chain V: R.83, R.211 Ligand excluded by PLIP DMF.20: 4 residues within 4Å: Chain J: Y.172, A.175, D.176, G.183 Ligand excluded by PLIP DMF.21: 5 residues within 4Å: Chain 1: D.82 Chain J: A.77, N.81, W.129 Chain N: R.57 Ligand excluded by PLIP DMF.22: 3 residues within 4Å: Chain D: R.221 Chain K: V.187, R.188 Ligand excluded by PLIP DMF.23: 5 residues within 4Å: Chain K: Y.35, I.36, A.56, R.57, A.60 Ligand excluded by PLIP DMF.24: 6 residues within 4Å: Chain H: R.57 Chain K: A.77, I.80, W.129 Chain V: Y.81, D.82 Ligand excluded by PLIP DMF.25: 2 residues within 4Å: Chain D: R.19 Chain K: R.19 Ligand excluded by PLIP DMF.26: 8 residues within 4Å: Chain K: T.1, V.31, K.33, I.45, A.46, G.47, A.49, A.52 Ligand excluded by PLIP DMF.27: 4 residues within 4Å: Chain D: K.151 Chain L: V.187, R.188 Chain N: R.221 Ligand excluded by PLIP DMF.28: 3 residues within 4Å: Chain M: Y.172, D.176, G.183 Ligand excluded by PLIP DMF.29: 2 residues within 4Å: Chain M: I.36 Ligands: DMF.32 Ligand excluded by PLIP DMF.30: 3 residues within 4Å: Chain M: I.196, D.198, R.209 Ligand excluded by PLIP DMF.31: 5 residues within 4Å: Chain I: R.57 Chain M: A.77, I.80, W.129 Chain W: D.82 Ligand excluded by PLIP DMF.32: 6 residues within 4Å: Chain 0: R.83, R.211 Chain M: T.37, A.60, E.64 Ligands: DMF.29 Ligand excluded by PLIP DMF.33: 5 residues within 4Å: Chain N: Y.172, A.175, D.176, G.183, P.184 Ligand excluded by PLIP DMF.34: 6 residues within 4Å: Chain K: R.57 Chain N: A.77, I.80, W.129 Chain Y: Y.81, D.82 Ligand excluded by PLIP DMF.35: 6 residues within 4Å: Chain O: L.66, G.69, G.70, V.94, Y.95, T.98 Ligand excluded by PLIP DMF.36: 5 residues within 4Å: Chain P: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.37: 6 residues within 4Å: Chain H: H.65, Y.66, L.69, E.70 Chain P: R.77, Y.81 Ligand excluded by PLIP DMF.38: 5 residues within 4Å: Chain Q: G.69, G.70, V.94, Y.95, T.98 Ligand excluded by PLIP DMF.39: 5 residues within 4Å: Chain R: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.40: 5 residues within 4Å: Chain S: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.41: 6 residues within 4Å: Chain T: L.66, G.69, G.70, V.94, Y.95, T.98 Ligand excluded by PLIP DMF.42: 5 residues within 4Å: Chain F: A.60, V.61, E.64 Chain T: R.83, R.211 Ligand excluded by PLIP DMF.43: 8 residues within 4Å: Chain C: E.70 Chain O: R.68 Chain T: F.73, R.77, Q.90, N.93, V.94, Q.97 Ligand excluded by PLIP DMF.44: 5 residues within 4Å: Chain U: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.45: 5 residues within 4Å: Chain V: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.46: 5 residues within 4Å: Chain W: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.47: 4 residues within 4Å: Chain 0: R.68 Chain W: Q.90, N.93, Q.97 Ligand excluded by PLIP DMF.48: 5 residues within 4Å: Chain I: E.70 Chain O: R.77, Q.90, N.93 Chain W: R.68 Ligand excluded by PLIP DMF.49: 5 residues within 4Å: Chain X: G.69, G.70, V.94, Y.95, T.98 Ligand excluded by PLIP DMF.50: 4 residues within 4Å: Chain J: A.60, E.64 Chain X: R.83, R.211 Ligand excluded by PLIP DMF.51: 6 residues within 4Å: Chain Y: N.65, L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.52: 6 residues within 4Å: Chain 1: R.68 Chain Y: R.77, Q.90, N.93, V.94, Q.97 Ligand excluded by PLIP DMF.53: 5 residues within 4Å: Chain Z: G.69, G.70, V.94, Y.95, T.98 Ligand excluded by PLIP DMF.54: 7 residues within 4Å: Chain 0: F.73, R.77, Q.90, N.93, V.94, Q.97 Chain Z: R.68 Ligand excluded by PLIP DMF.55: 5 residues within 4Å: Chain 0: L.66, G.69, G.70, Y.95, T.98 Ligand excluded by PLIP DMF.56: 4 residues within 4Å: Chain 0: Q.72, D.75 Chain M: V.61, H.65 Ligand excluded by PLIP DMF.57: 5 residues within 4Å: Chain 1: G.69, G.70, V.94, Y.95, T.98 Ligand excluded by PLIP DMF.58: 5 residues within 4Å: Chain 1: R.77, Q.90, N.93, Q.97 Chain X: R.68 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, G. et al., Inhibitors selective for mycobacterial versus human proteasomes. Nature (2009)

Release Date

2009-09-15

Peptides

Proteasome (Beta subunit) PrcB: ABCDEFGHIJKLMN
Proteasome (Alpha subunit) PrcA: OPQRSTUVWXYZ01

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
C

C
E

D
G

E
J

F
L

G
N

H
P

I
R

J
T

K
V

L
X

M
Z

N
2

O
D

P
A

Q
B

R
F

S
I

T
K

U
M

V
O

W
Q

X
S

Y
U

Z
W

0
Y

1
1

Proteasome (Beta subunit) PrcB

Proteasome (Alpha subunit) PrcA

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