SMTL ID : 3hhe.1

Crystal structure of ribose-5-phosphate isomerase A from Bartonella henselae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 5RP: RIBULOSE-5-PHOSPHATE(Non-covalent)

5RP.1: 16 residues within 4Å: Chain A: S.49, G.50, S.51, T.52, D.104, G.105, A.106, D.107, K.117, G.118, G.119, G.120, G.121, A.122, E.126, K.144 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:S.49, A:S.51, A:T.52, A:T.52, A:D.104, A:G.105, A:K.117, A:G.118, A:G.119, A:G.120, A:A.122 Water bridges: A:K.28, A:S.49, A:S.51, A:V.53, A:A.106 Salt bridges: A:K.28, A:K.144 5RP.4: 16 residues within 4Å: Chain B: S.49, G.50, S.51, T.52, D.104, G.105, A.106, D.107, K.117, G.118, G.119, G.120, G.121, A.122, E.126, K.144 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:S.49, B:S.51, B:T.52, B:G.105, B:K.117, B:G.118, B:G.119, B:G.120, B:G.121, B:A.122, B:E.126 Water bridges: B:K.28, B:K.28, B:S.49, B:V.53, B:A.106, B:A.106 Salt bridges: B:K.28, B:K.144

2 x K: POTASSIUM ION(Non-covalent)

K.2: 6 residues within 4Å: Chain A: L.220, I.222, P.223, V.225 Chain B: V.226, E.227 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Metal complexes: A:L.220, A:I.222, A:V.225, B:E.227 K.5: 7 residues within 4Å: Chain A: L.220, V.226, E.227 Chain B: L.220, I.222, P.223, V.225 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Metal complexes: B:L.220, B:V.225, A:E.227

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.63 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of ribose-5-phosphate isomerase A from Bartonella henselae. To be Published

Release Date

2009-05-26

Peptides

Ribose-5-phosphate isomerase A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribose-5-phosphate isomerase A