SMTL ID : 3hhn.1

Crystal structure of class I ligase ribozyme self-ligation product, in complex with U1A RBD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-dimer

Ligands

34 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 2 residues within 4Å: Chain A: K.22, K.26 No protein-ligand interaction detected (PLIP) MG.2: 2 residues within 4Å: Chain B: A.38, A.39 No protein-ligand interaction detected (PLIP) MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: C.86, G.88, U.122 No protein-ligand interaction detected (PLIP) MG.5: 2 residues within 4Å: Chain B: G.91, G.93 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain B: A.10, A.11, A.130, A.131 No protein-ligand interaction detected (PLIP) MG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.8: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain B: G.104 No protein-ligand interaction detected (PLIP) MG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain B: G.9 No protein-ligand interaction detected (PLIP) MG.12: 1 residues within 4Å: Chain B: G.24 No protein-ligand interaction detected (PLIP) MG.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.14: 1 residues within 4Å: Chain B: A.111 No protein-ligand interaction detected (PLIP) MG.15: 2 residues within 4Å: Chain B: G.53, C.54 No protein-ligand interaction detected (PLIP) MG.16: 1 residues within 4Å: Chain B: C.73 No protein-ligand interaction detected (PLIP) MG.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.18: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.19: 1 residues within 4Å: Chain B: G.72 No protein-ligand interaction detected (PLIP) MG.20: 2 residues within 4Å: Chain B: C.54, G.90 No protein-ligand interaction detected (PLIP) MG.21: 1 residues within 4Å: Chain B: A.38 No protein-ligand interaction detected (PLIP) MG.22: 2 residues within 4Å: Chain D: A.38, A.39 No protein-ligand interaction detected (PLIP) MG.23: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.24: 4 residues within 4Å: Chain D: G.85, C.86, G.88, U.122 No protein-ligand interaction detected (PLIP) MG.25: 1 residues within 4Å: Chain D: G.93 No protein-ligand interaction detected (PLIP) MG.26: 3 residues within 4Å: Chain D: A.10, A.11, A.131 No protein-ligand interaction detected (PLIP) MG.27: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.28: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.29: 1 residues within 4Å: Chain D: G.103 No protein-ligand interaction detected (PLIP) MG.30: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.31: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.32: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.33: 2 residues within 4Å: Chain D: C.99, A.118 No protein-ligand interaction detected (PLIP) MG.34: 3 residues within 4Å: Chain D: A.11, A.13, C.54 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shechner, D.M. et al., Crystal structure of the catalytic core of an RNA-polymerase ribozyme. Science (2009)

Release Date

2009-11-24

Peptides

U1 small nuclear ribonucleoprotein A: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
D

U1 small nuclear ribonucleoprotein A

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