- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 6 x CAQ: CATECHOL(Non-covalent)
CAQ.2: 3 residues within 4Å:- Chain A: I.245, D.246, T.253
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.245, A:D.246
- Hydrogen bonds: A:T.253
- Water bridges: A:T.253, A:T.253
CAQ.3: 4 residues within 4Å:- Chain A: H.52
- Chain B: E.32, R.33, A.36
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:E.32, B:R.33, B:A.36
- Hydrogen bonds: B:R.33, B:R.33, A:H.52
CAQ.4: 12 residues within 4Å:- Chain A: V.81, I.102, G.104, P.105, Y.106, Y.162, Y.196, R.217, H.220, H.222, Q.236
- Ligands: FE.1
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.81, A:I.102, A:Y.106, A:Y.196
- Hydrogen bonds: A:R.217, A:Q.236
CAQ.11: 3 residues within 4Å:- Chain B: I.245, D.246, T.253
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:I.245, B:D.246
- Hydrogen bonds: B:T.253, B:T.253
- Water bridges: B:T.253
CAQ.12: 4 residues within 4Å:- Chain A: E.32, R.33, A.36
- Chain B: H.52
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:E.32, A:R.33, A:A.36
- Hydrogen bonds: A:R.33, A:R.33, B:H.52
CAQ.13: 12 residues within 4Å:- Chain B: V.81, I.102, G.104, P.105, Y.106, Y.162, Y.196, R.217, H.220, H.222, Q.236
- Ligands: FE.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:V.81, B:I.102, B:Y.106, B:Y.196
- Hydrogen bonds: B:R.217, B:Q.236
- 2 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
6PL.5: 22 residues within 4Å:- Chain A: A.25, T.26, A.27, T.29, L.34, I.37, A.41
- Chain B: L.45, V.48, I.49, V.54, E.58, V.61, F.62, W.65, W.75, F.78, L.79, Q.206, F.207, A.210
- Ligands: 6PL.14
16 PLIP interactions:13 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:V.48, B:I.49, B:V.54, B:E.58, B:F.62, B:F.62, B:W.75, B:F.78, B:L.79, B:Q.206, B:F.207, B:A.210, A:L.34, A:I.37, A:A.41
- Water bridges: B:Q.206
6PL.14: 22 residues within 4Å:- Chain A: L.45, V.48, I.49, V.54, E.58, V.61, F.62, W.65, W.75, F.78, L.79, Q.206, F.207, A.210
- Chain B: A.25, T.26, A.27, T.29, L.34, I.37, A.41
- Ligands: 6PL.5
16 PLIP interactions:13 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:V.48, A:I.49, A:V.54, A:E.58, A:F.62, A:F.62, A:W.75, A:F.78, A:L.79, A:Q.206, A:F.207, A:A.210, B:L.34, B:I.37, B:A.41
- Water bridges: A:Q.206
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain A: K.150
Ligand excluded by PLIPCL.9: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.16: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPCL.17: 1 residues within 4Å:- Chain B: K.150
Ligand excluded by PLIPCL.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matera, I. et al., Catechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: Quantitative structure/activity relationship and the crystal structures of native enzyme and catechols adducts. J.Struct.Biol. (2010)
- Release Date
- 2010-01-12
- Peptides
- Catechol 1,2-dioxygenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x FE: FE (III) ION(Non-covalent)
- 6 x CAQ: CATECHOL(Non-covalent)
- 2 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Matera, I. et al., Catechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: Quantitative structure/activity relationship and the crystal structures of native enzyme and catechols adducts. J.Struct.Biol. (2010)
- Release Date
- 2010-01-12
- Peptides
- Catechol 1,2-dioxygenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A