SMTL ID : 3hi0.1

Crystal structure of Putative exopolyphosphatase (17739545) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.30 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 10 residues within 4Å: Chain A: A.38, P.39, A.40, A.321, E.324, L.325, L.328, S.392, F.393 Chain B: R.374 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.40, A:E.324, A:L.325, A:L.328 Hydrogen bonds: A:P.39, B:R.374 MPD.5: 8 residues within 4Å: Chain A: R.374 Chain B: A.38, A.40, A.321, E.324, L.325, S.391, S.392 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:E.324, B:L.325 Water bridges: B:V.41 Hydrogen bonds: A:R.374, A:R.374

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 7 residues within 4Å: Chain A: H.335, L.339, L.443, V.446, Y.447, S.450, S.452 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.339, A:L.443, A:Y.447 Hydrogen bonds: A:S.450 Water bridges: A:R.331, A:R.411 Salt bridges: A:H.335 ACT.6: 4 residues within 4Å: Chain B: R.10, P.16, Q.84, Q.86 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.86 Salt bridges: B:R.10

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.411, Y.447, R.491 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.487, R.491 Ligand excluded by PLIP

Links

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Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Putative exopolyphosphatase (17739545) from AGROBACTERIUM TUMEFACIENS str. C58 (Dupont) at 2.30 A resolution. To be published

Release Date

2009-06-16

Peptides

Putative exopolyphosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative exopolyphosphatase