SMTL ID : 3hjm.2 (1 other biounit)

Crystal structure of human Glutathione Transferase Pi Y108V mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: G.77, Q.147 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.77, H2O.1, H2O.2, H2O.3 CA.2: 1 residues within 4Å: Chain A: D.171 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.171, A:D.171, H2O.6 CA.5: 2 residues within 4Å: Chain B: G.77, Q.147 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:G.77, H2O.7, H2O.7, H2O.8, H2O.8

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.3: 6 residues within 4Å: Chain A: R.13, Q.51, P.53, Q.64, S.65 Ligands: CL.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.13, A:S.65, A:S.65 Water bridges: A:N.66 CO3.7: 4 residues within 4Å: Chain B: F.142, Q.147, I.148, R.186 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.186, B:R.186

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 5 residues within 4Å: Chain B: A.22, W.28, E.30, F.192, E.197 3 PLIP interactions: 3 interactions with chain B Water bridges: B:W.28, B:F.192 Salt bridges: B:E.197

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 2 residues within 4Å: Chain B: D.171, A.172 2 PLIP interactions: 2 interactions with chain B Water bridges: B:D.171, B:D.171

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain A: Q.64 Chain B: D.98 Ligands: CO3.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quesada-Soriano, I. et al., Influence of the H-site residue 108 on human glutathione transferase P1-1 ligand binding: structure-thermodynamic relationships and thermal stability. Protein Sci. (2009)

Release Date

2009-09-22

Peptides

Glutathione S-transferase P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Glutathione S-transferase P

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