Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 3hkp.1
Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with protocatechuate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-dimer
Ligands
2 x
FE
:
FE (III) ION
(Non-covalent)
FE.1:
4 residues within 4Å:
Chain A:
Y.162
,
H.220
,
H.222
Ligands:
DHB.2
3
PLIP interactions
:
3 interactions with chain A
Metal complexes:
A:Y.162
,
A:H.220
,
A:H.222
FE.4:
4 residues within 4Å:
Chain B:
Y.162
,
H.220
,
H.222
Ligands:
DHB.5
3
PLIP interactions
:
3 interactions with chain B
Metal complexes:
B:Y.162
,
B:H.220
,
B:H.222
2 x
DHB
:
3,4-DIHYDROXYBENZOIC ACID
(Non-covalent)
DHB.2:
15 residues within 4Å:
Chain A:
P.76
,
L.77
,
D.80
,
V.81
,
I.102
,
G.104
,
P.105
,
Y.106
,
Y.162
,
Y.196
,
R.217
,
H.220
,
H.222
,
Q.236
Ligands:
FE.1
7
PLIP interactions
:
7 interactions with chain A
Hydrophobic interactions:
A:I.102
,
A:P.105
,
A:Y.106
,
A:Y.196
Hydrogen bonds:
A:V.81
,
A:R.217
,
A:Q.236
DHB.5:
15 residues within 4Å:
Chain B:
P.76
,
L.77
,
D.80
,
V.81
,
I.102
,
G.104
,
P.105
,
Y.106
,
Y.162
,
Y.196
,
R.217
,
H.220
,
H.222
,
Q.236
Ligands:
FE.4
7
PLIP interactions
:
7 interactions with chain B
Hydrophobic interactions:
B:I.102
,
B:P.105
,
B:Y.106
,
B:Y.196
Hydrogen bonds:
B:V.81
,
B:R.217
,
B:Q.236
2 x
6PL
:
(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE
(Non-covalent)
6PL.3:
21 residues within 4Å:
Chain A:
A.25
,
T.26
,
A.27
,
T.29
,
L.34
,
I.37
,
A.41
,
L.42
,
L.45
Chain B:
L.45
,
V.48
,
I.49
,
V.54
,
E.58
,
V.61
,
F.62
,
W.65
,
F.78
,
L.79
,
Q.206
,
F.207
19
PLIP interactions
:
15 interactions with chain B
,
4 interactions with chain A
Hydrophobic interactions:
B:L.45
,
B:L.45
,
B:V.48
,
B:I.49
,
B:V.54
,
B:E.58
,
B:E.58
,
B:F.62
,
B:F.62
,
B:F.62
,
B:W.65
,
B:W.65
,
B:F.78
,
B:L.79
,
B:Q.206
,
A:T.29
,
A:A.41
,
A:L.42
,
A:L.45
6PL.6:
21 residues within 4Å:
Chain A:
L.45
,
V.48
,
I.49
,
V.54
,
E.58
,
V.61
,
F.62
,
W.65
,
F.78
,
L.79
,
Q.206
,
F.207
Chain B:
A.25
,
T.26
,
A.27
,
T.29
,
L.34
,
I.37
,
A.41
,
L.42
,
L.45
19
PLIP interactions
:
4 interactions with chain B
,
15 interactions with chain A
Hydrophobic interactions:
B:T.29
,
B:A.41
,
B:L.42
,
B:L.45
,
A:L.45
,
A:L.45
,
A:V.48
,
A:I.49
,
A:V.54
,
A:E.58
,
A:E.58
,
A:F.62
,
A:F.62
,
A:F.62
,
A:W.65
,
A:W.65
,
A:F.78
,
A:L.79
,
A:Q.206
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Matera, I. et al., Catechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: Quantitative structure/activity relationship and the crystal structures of native enzyme and catechols adducts. J.Struct.Biol. (2010)
Release Date
2010-01-12
Peptides
Catechol 1,2-dioxygenase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Catechol 1,2-dioxygenase
Toggle Identical (AB)
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme