SMTL ID : 3hkv.1

Human poly(ADP-ribose) polymerase 10, catalytic fragment in complex with an inhibitor 3-aminobenzamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: R.97, K.109, R.154 Chain B: R.97, R.102, R.154 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.97, A:K.109, A:R.154, B:R.97, B:R.154 PO4.2: 4 residues within 4Å: Chain A: R.45, N.129, D.131, H.133 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.129, A:D.131, A:D.131, A:D.131 Salt bridges: A:R.45, A:H.133 PO4.3: 4 residues within 4Å: Chain A: C.69, E.70, R.71, D.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.70, A:R.71, A:D.145, A:D.145

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: G.160, H.163, L.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.160, A:G.160 Water bridges: A:R.159 NA.6: 3 residues within 4Å: Chain B: G.160, H.163, L.165 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.160 Water bridges: B:G.160

2 x 3AB: 3-aminobenzamide(Non-covalent)

3AB.5: 8 residues within 4Å: Chain A: H.80, G.81, A.104, Y.112, A.114, L.119, S.120, Y.125 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.112, A:Y.112, A:A.114, A:L.119 Hydrogen bonds: A:G.81, A:G.81, A:A.104 pi-Stacking: A:Y.125 3AB.7: 10 residues within 4Å: Chain B: Y.79, H.80, G.81, A.104, Y.112, F.113, A.114, L.119, S.120, Y.125 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.112, B:A.114, B:L.119, B:Y.125 Hydrogen bonds: B:G.81, B:G.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karlberg, T. et al., Human Poly(Adp-Ribose) Polymerase 10, Catalytic Fragment in Complex with an Inhibitor 3-Aminobenzamide. To be Published

Release Date

2009-06-16

Peptides

Poly [ADP-ribose] polymerase 10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Poly [ADP-ribose] polymerase 10