SMTL ID : 3hmf.1 (1 other biounit)

Crystal Structure of the second Bromodomain of Human Poly-bromodomain containing protein 1 (PB1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.114 Ligands: CL.4, CL.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.114 ZN.2: 2 residues within 4Å: Chain A: H.115, E.116 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.115, A:E.116

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: K.109, A.110, E.113, H.114 Ligands: CL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.109, A:K.109, A:E.113 Water bridges: A:A.110

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: H.114 Ligands: ZN.1, EDO.3, CL.5 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: H.114 Ligands: ZN.1, CL.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippakopoulos, P. et al., Histone recognition and large-scale structural analysis of the human bromodomain family. Cell(Cambridge,Mass.) (2012)

Release Date

2009-06-23

Peptides

Protein polybromo-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein polybromo-1

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