SMTL ID : 3hmo.2 (1 other biounit)

Crystal structure of human Mps1 catalytic domain in complex with the inhibitor staurosporine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)

7PE.1: 12 residues within 4Å: Chain A: S.66, S.70, K.71, V.72, K.86, V.88, Y.101, E.104, M.133, I.196, D.197 Ligands: STU.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.86 7PE.10: 12 residues within 4Å: Chain B: S.66, S.70, K.71, V.72, K.86, V.88, Y.101, E.104, M.133, I.196, D.197 Ligands: STU.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.86

2 x STU: STAUROSPORINE(Non-covalent)

STU.2: 14 residues within 4Å: Chain A: I.64, G.65, V.72, A.84, K.86, E.136, C.137, G.138, N.139, D.141, A.184, L.187, I.196 Ligands: 7PE.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.64, A:V.72, A:K.86, A:L.187 Hydrogen bonds: A:G.138, A:D.141 Water bridges: A:S.66 STU.11: 14 residues within 4Å: Chain B: I.64, G.65, V.72, A.84, K.86, E.136, C.137, G.138, N.139, D.141, A.184, L.187, I.196 Ligands: 7PE.10 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.64, B:V.72, B:K.86, B:L.187 Hydrogen bonds: B:G.138, B:D.141 Water bridges: B:S.66

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 1 residues within 4Å: Chain A: L.319 No protein-ligand interaction detected (PLIP) IPA.4: 5 residues within 4Å: Chain A: L.90, R.102, I.126, T.127, D.128 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.126 IPA.5: 4 residues within 4Å: Chain A: P.293, E.294, K.295, D.296 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.295 Hydrogen bonds: A:K.295, A:D.296 Water bridges: A:D.296 IPA.12: 1 residues within 4Å: Chain B: L.319 No protein-ligand interaction detected (PLIP) IPA.13: 5 residues within 4Å: Chain B: L.90, R.102, I.126, T.127, D.128 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.126 IPA.14: 4 residues within 4Å: Chain B: P.293, E.294, K.295, D.296 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:K.295 Hydrogen bonds: B:K.295, B:D.296 Water bridges: B:D.296

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: C.303, K.306, Q.311, I.313, E.317 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.303, A:E.317 GOL.7: 4 residues within 4Å: Chain A: P.283, K.306, R.307, D.308 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.283, A:R.307, A:R.307, A:D.308 GOL.8: 4 residues within 4Å: Chain A: D.299, K.302, C.303, K.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.299, A:K.306 GOL.9: 6 residues within 4Å: Chain A: H.172, P.246, K.247, S.314, I.315, P.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.315 GOL.15: 5 residues within 4Å: Chain B: C.303, K.306, Q.311, I.313, E.317 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:C.303, B:E.317 GOL.16: 4 residues within 4Å: Chain B: P.283, K.306, R.307, D.308 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:P.283, B:R.307, B:R.307, B:D.308 GOL.17: 4 residues within 4Å: Chain B: D.299, K.302, C.303, K.306 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.299, B:K.306 GOL.18: 6 residues within 4Å: Chain B: H.172, P.246, K.247, S.314, I.315, P.316 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chu, M.L. et al., Biophysical and X-ray crystallographic analysis of Mps1 kinase inhibitor complexes. Biochemistry (2010)

Release Date

2010-02-02

Peptides

Dual specificity protein kinase TTK: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dual specificity protein kinase TTK

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