SMTL ID : 3hn4.1

Crystal structure of the NK2 fragment (28-289) of human hepatocyte growth factor/scatter factor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 9 residues within 4Å: Chain A: F.137, E.158, G.160, G.161, W.163, F.165, R.172, Y.173, V.175 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.161 Salt bridges: A:E.158, A:E.158, A:R.172 pi-Cation interactions: A:Y.173

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 2 residues within 4Å: Chain A: K.35, R.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.35, A:K.35, A:R.48, A:R.48 MPD.3: 4 residues within 4Å: Chain A: K.205, I.206, L.249, D.250 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.205, A:D.250 Hydrogen bonds: A:I.206

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: P.215, H.216, R.217, R.254 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.254, A:R.254 Salt bridges: A:H.216, A:R.217, A:R.254 SO4.5: 8 residues within 4Å: Chain A: T.58, P.139, Y.142, R.143, G.144, K.145, D.146, Q.148 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.58, A:P.139, A:G.144, A:K.145, A:D.146, A:Q.148 Water bridges: A:L.147, A:L.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tolbert, W.D. et al., Structural basis for agonism and antagonism of hepatocyte growth factor. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-06-09

Peptides

Hepatocyte growth factor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hepatocyte growth factor