SMTL ID : 3hpr.1 (1 other biounit)

Crystal structure of V148G adenylate kinase from E. coli, in complex with Ap5A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)

AP5.1: 36 residues within 4Å: Chain A: A.8, P.9, G.10, A.11, G.12, K.13, G.14, T.15, T.31, G.32, L.35, R.36, M.53, K.57, L.58, V.59, V.64, G.85, F.86, R.88, Q.92, R.119, R.123, V.132, Y.133, H.134, F.137, N.138, R.156, D.158, R.167, G.198, K.200, P.201, V.202, V.205 40 PLIP interactions: 40 interactions with chain A Hydrogen bonds: A:G.10, A:A.11, A:G.12, A:K.13, A:G.14, A:T.15, A:T.15, A:T.31, A:G.32, A:K.57, A:V.59, A:Q.92, A:Q.92, A:Y.133, A:K.200 Water bridges: A:K.13, A:R.36, A:R.36, A:R.36, A:R.88, A:R.88, A:R.119, A:R.119, A:R.123, A:R.123, A:R.123, A:R.156, A:R.156 Salt bridges: A:K.13, A:K.13, A:R.36, A:R.36, A:R.88, A:R.123, A:R.123, A:R.123, A:R.156, A:R.156 pi-Cation interactions: A:R.88, A:R.119

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schrank, T.P. et al., Rational modulation of conformational fluctuations in adenylate kinase reveals a local unfolding mechanism for allostery and functional adaptation in proteins. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-11-03

Peptides

Adenylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylate kinase

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