SMTL ID : 3hq5.1

Progesterone Receptor bound to an Alkylpyrrolidine ligand.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: P.60, G.61, R.63, N.64 Ligands: SO4.2, SO4.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.61, A:N.64 Salt bridges: A:R.63 SO4.2: 6 residues within 4Å: Chain A: P.60, G.61, M.167, S.170, Y.171 Ligands: SO4.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.60, A:S.170, A:S.170, A:Y.171 SO4.3: 1 residues within 4Å: Ligands: SO4.1 No protein-ligand interaction detected (PLIP) SO4.4: 5 residues within 4Å: Chain A: Q.110, K.113, Y.118, S.119, L.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.110, A:Y.118 Water bridges: A:S.115, A:S.115

2 x GKK: 2-chloro-4-{[(3S)-1-methylpyrrolidin-3-yl][2-(trifluoromethyl)benzyl]amino}benzonitrile(Non-covalent)

GKK.5: 18 residues within 4Å: Chain A: L.41, N.42, L.44, Q.48, M.79, M.82, V.83, L.86, R.89, F.101, F.117, L.120, M.124, L.210, Y.213, C.214, F.228, M.232 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.41, A:F.101, A:F.117, A:L.120, A:Y.213 Hydrogen bonds: A:R.89 Water bridges: A:R.89 GKK.7: 19 residues within 4Å: Chain B: L.41, N.42, L.44, Q.48, M.79, M.82, V.83, L.86, R.89, F.101, F.117, L.120, M.124, L.210, Y.213, C.214, T.217, F.228, M.232 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.41, B:L.41, B:L.120, B:Y.213 Hydrogen bonds: B:Q.48, B:R.89 Water bridges: B:R.89 pi-Stacking: B:F.117

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 6 residues within 4Å: Chain A: Y.76, S.80, T.152, H.204, H.211, I.243 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.76, A:T.152 Water bridges: A:S.80, A:S.80 GOL.8: 7 residues within 4Å: Chain B: Y.76, S.80, T.152, H.204, H.211, I.243, P.250 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.76, B:S.80, B:S.80, B:H.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, S.K. et al., Rational design of orally-active, pyrrolidine-based progesterone receptor partial agonists. Bioorg.Med.Chem.Lett. (2009)

Release Date

2010-03-02

Peptides

Progesterone receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Progesterone receptor

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