SMTL ID : 3hqg.1

Crystal structure of restriction endonuclease EcoRII catalytic C-terminal domain in complex with cognate DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.146 Chain B: G.8, G.9 Chain C: G.7, G.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.146 Water bridges: A:K.146, A:Q.168 GOL.2: 5 residues within 4Å: Chain D: K.146 Chain E: G.8, G.9 Chain F: G.7, G.8 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.146 Water bridges: D:K.146, D:Q.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golovenko, D. et al., Structural mechanisms for the 5'-CCWGG sequence recognition by the N- and C-terminal domains of EcoRII. Nucleic Acids Res. (2009)

Release Date

2009-09-22

Peptides

Type-2 restriction enzyme EcoRII: AD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

Type-2 restriction enzyme EcoRII