SMTL ID : 3hrw.1

Crystal structure of hemoglobin from mouse (Mus musculus)at 2.8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)

HEM.1: 19 residues within 4Å: Chain A: T.39, Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 23 PLIP interactions: 22 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:Y.42, A:Y.42, A:F.43, A:F.43, A:F.43, A:K.61, A:K.61, A:V.62, A:A.65, A:L.83, A:L.83, A:L.86, A:L.91, A:L.91, A:V.93, A:N.97, A:L.101, A:V.132 Salt bridges: A:H.45, A:H.58, A:K.61 Metal complexes: A:H.87, H2O.1 HEM.2: 15 residues within 4Å: Chain B: T.38, Y.41, F.42, F.45, H.63, K.66, V.67, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:Y.41, B:Y.41, B:F.42, B:F.42, B:F.42, B:V.67, B:V.67, B:L.88, B:L.96, B:V.98, B:N.102, B:F.103, B:L.106, B:L.141, B:L.141 Salt bridges: B:K.59, B:K.66 pi-Stacking: B:H.63, B:H.63 Metal complexes: B:H.92 HEM.3: 20 residues within 4Å: Chain C: T.39, Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.66, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 21 PLIP interactions: 20 interactions with chain C, 1 Ligand-Water interactions, Hydrophobic interactions: C:T.39, C:Y.42, C:Y.42, C:F.43, C:F.43, C:V.62, C:A.65, C:L.83, C:L.86, C:L.91, C:V.93, C:F.98, C:V.132, C:L.136 Salt bridges: C:H.45, C:H.58, C:K.61 pi-Stacking: C:H.58, C:H.58 Metal complexes: C:H.87, H2O.2 HEM.4: 15 residues within 4Å: Chain D: L.31, Y.41, F.42, H.63, K.66, V.67, A.70, L.88, H.92, L.96, V.98, N.102, F.103, L.106, L.141 15 PLIP interactions: 14 interactions with chain D, 1 Ligand-Water interactions, Hydrophobic interactions: D:L.31, D:Y.41, D:F.42, D:V.67, D:V.67, D:L.88, D:L.96, D:L.96, D:V.98, D:N.102, D:L.141 Salt bridges: D:H.63, D:K.66 pi-Stacking: D:H.63 Metal complexes: H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sundaresan, S.S. et al., Crystal structure of hemoglobin from mouse (Mus musculus) compared with those from other small animals and humans. Acta Crystallogr.,Sect.F (2021)

Release Date

2009-06-23

Peptides

Hemoglobin subunit alpha: AC
Hemoglobin subunit beta-1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Hemoglobin subunit alpha

Hemoglobin subunit beta-1