- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x EPA: 5,8,11,14,17-EICOSAPENTAENOIC ACID(Non-covalent)
EPA.5: 16 residues within 4Å:- Chain A: V.89, F.178, Y.321, V.322, S.326, Y.328, Y.358, W.360, F.491, M.495, V.496, G.499, A.500, S.503, L.504, L.507
12 PLIP interactions:12 interactions with chain A- Hydrophobic interactions: A:V.89, A:Y.321, A:V.322, A:Y.358, A:W.360, A:W.360, A:F.491, A:F.491, A:V.496, A:L.504
- Hydrogen bonds: A:Y.358, A:Y.358
EPA.16: 22 residues within 4Å:- Chain B: F.178, F.182, G.200, V.317, Y.321, V.322, L.325, S.326, Y.328, N.348, I.350, F.354, Y.358, W.360, F.491, M.495, V.496, G.499, A.500, S.503, G.506, L.507
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:F.178, B:F.182, B:F.182, B:V.317, B:Y.321, B:V.322, B:L.325, B:I.350, B:F.354, B:F.354, B:F.354, B:W.360, B:F.491, B:V.496, B:L.507, B:L.507
- Hydrogen bonds: B:Y.328
- Salt bridges: B:R.93
- 4 x AKR: ACRYLIC ACID(Non-covalent)
AKR.6: 4 residues within 4Å:- Chain A: S.450, F.451, E.452, K.465
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.451, A:K.465
- Hydrogen bonds: A:S.450, A:F.451, A:E.452
AKR.7: 6 residues within 4Å:- Chain A: T.210, R.213, K.216, Q.243, V.244, E.245
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:R.213, A:R.213
- Hydrogen bonds: A:E.245
- Salt bridges: A:R.213, A:K.216
AKR.17: 4 residues within 4Å:- Chain B: S.450, F.451, E.452, K.465
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:K.465
- Hydrogen bonds: B:F.451, B:E.452
AKR.18: 5 residues within 4Å:- Chain B: R.213, K.216, Q.243, V.244, E.245
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:E.245
- Hydrogen bonds: B:E.245
- Salt bridges: B:R.213, B:K.216
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
COH.8: 16 residues within 4Å:- Chain A: A.172, A.175, Q.176, T.179, H.180, F.183, K.184, T.185, H.187, V.268, N.355, Y.358, H.359, H.361, L.364, V.420
17 PLIP interactions:17 interactions with chain A,- Hydrophobic interactions: A:A.175, A:Q.176, A:F.183, A:F.183, A:V.268, A:L.364, A:V.420, A:V.420
- Hydrogen bonds: A:F.183, A:T.185, A:T.185, A:N.355
- Salt bridges: A:H.187, A:H.187
- pi-Stacking: A:H.180, A:H.359
- Metal complexes: A:H.361
COH.19: 18 residues within 4Å:- Chain B: Y.121, A.172, F.173, A.175, Q.176, H.180, F.183, K.184, T.185, V.268, N.355, Y.358, H.359, H.361, L.364, L.381, V.420, Q.427
18 PLIP interactions:18 interactions with chain B,- Hydrophobic interactions: B:F.173, B:A.175, B:Q.176, B:F.183, B:V.268, B:Y.358, B:L.364, B:L.381, B:V.420, B:V.420
- Hydrogen bonds: B:Y.121, B:T.185, B:N.355, B:Q.427
- Salt bridges: B:H.187
- pi-Stacking: B:H.180, B:H.359
- Metal complexes: B:H.361
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.9: 5 residues within 4Å:- Chain A: Q.379, N.383, S.385, I.386, E.389
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.383, A:E.389
NAG.20: 5 residues within 4Å:- Chain B: Q.379, N.383, S.385, I.386, E.389
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.383, B:E.389, B:E.389
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.10: 8 residues within 4Å:- Chain A: E.152, K.153, L.156, R.157, R.158, R.411, E.459, E.463
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:E.152, A:L.156
- Hydrogen bonds: A:R.158, A:R.411, A:E.459, A:E.463, A:E.463
- Salt bridges: A:R.158, A:R.411
BOG.21: 7 residues within 4Å:- Chain B: K.148, E.152, L.156, R.157, R.158, I.415, Q.418
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.418
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.11: 8 residues within 4Å:- Chain A: H.62, Q.165, L.325, R.486, A.489, I.490, F.491, V.496
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.486, A:I.490, A:F.491
EDO.12: 8 residues within 4Å:- Chain A: P.135, M.136, L.144, S.428, R.429, K.432, Y.433
- Ligands: EDO.13
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Y.433
EDO.13: 8 residues within 4Å:- Chain A: V.128, A.129, D.130, C.132, T.134, P.135, K.432
- Ligands: EDO.12
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:C.132
EDO.14: 2 residues within 4Å:- Chain A: D.30, C.31
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.30, A:D.30, A:C.31
EDO.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)EDO.22: 8 residues within 4Å:- Chain B: H.62, Q.165, L.325, R.486, A.489, I.490, F.491, V.496
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:L.325, B:R.486, B:I.490, B:F.491
EDO.23: 4 residues within 4Å:- Chain B: K.224, Y.227, V.234, N.283
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.224, B:K.224, B:N.283
EDO.24: 7 residues within 4Å:- Chain B: P.135, M.136, L.144, S.428, R.429, K.432, Y.433
2 PLIP interactions:2 interactions with chain B- Water bridges: B:Y.433, B:E.475
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vecchio, A.J. et al., Structural basis of fatty acid substrate binding to cyclooxygenase-2. J.Biol.Chem. (2010)
- Release Date
- 2010-05-12
- Peptides
- Prostaglandin G/H synthase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 1 x NAG- NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x EPA: 5,8,11,14,17-EICOSAPENTAENOIC ACID(Non-covalent)
- 4 x AKR: ACRYLIC ACID(Non-covalent)
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vecchio, A.J. et al., Structural basis of fatty acid substrate binding to cyclooxygenase-2. J.Biol.Chem. (2010)
- Release Date
- 2010-05-12
- Peptides
- Prostaglandin G/H synthase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B