SMTL ID : 3hsb.1

Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-hexamer

Ligands

1 x A- G- A- G- A- G- A: RNA (5'-R(*AP*GP*AP*GP*AP*GP*A)-3')(Non-covalent)

A-G-A-G-A-G-A.1: 36 residues within 4Å: Chain A: F.29, L.30, N.32, G.33, F.34, Q.35, S.65, T.66 Chain B: F.29, L.30, N.32, G.33, F.34, Q.35, R.37, S.65, T.66 Chain C: F.29, L.30, N.32, G.33, F.34, Q.35, L.36, R.37, S.65, T.66 Chain D: F.29, L.30, G.33, S.65, T.66 Chain F: L.30, N.32, F.34, L.36 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Someya, T. et al., Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq. Nucleic Acids Res. (2012)

Release Date

2010-06-23

Peptides

Protein hfq: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Protein hfq

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