SMTL ID : 3hsh.2 (2 other biounits)

Crystal structure of human collagen XVIII trimerization domain (Tetragonal crystal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: Q.17, E.20 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.17 SO4.4: 5 residues within 4Å: Chain C: E.23, R.38, V.39, Q.40, N.41 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.41 Water bridges: C:E.23 Salt bridges: C:R.38 SO4.5: 2 residues within 4Å: Chain C: W.8, A.9 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.9 Water bridges: C:T.10, C:T.10

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: R.11, Q.12, L.15 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.12, A:Q.12 GOL.3: 4 residues within 4Å: Chain A: R.11, E.34, Y.36, K.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.11, A:R.11, A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boudko, S.P. et al., Crystal structure of human collagen XVIII trimerization domain: A novel collagen trimerization Fold. J.Mol.Biol. (2009)

Release Date

2009-08-11

Peptides

Collagen alpha-1(XVIII) chain: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Collagen alpha-1(XVIII) chain

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