SMTL ID : 3hup.1

High-resolution structure of the extracellular domain of human CD69

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.37 Å

Oligo State

homo-dimer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: V.33, K.34 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain A: W.86, K.90, E.91, F.92, N.93, W.95 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: S.31, T.32 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain B: W.86, K.90, E.91, F.92, N.93, W.95 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain B: F.29, S.31, T.32, V.33 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: G.22, Y.23 Chain B: C.16, S.17, W.20 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:G.22, B:G.22 Water bridges: A:Y.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kolenko, P. et al., The high-resolution structure of the extracellular domain of human CD69 using a novel polymer. Acta Crystallogr.,Sect.F (2009)

Release Date

2009-12-15

Peptides

Early activation antigen CD69: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Early activation antigen CD69