SMTL ID : 3huq.1

Thieno[3,2-b]thiophene in complex with T4 lysozyme L99A/M102Q

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: R.14, Y.18, K.19 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.19 Water bridges: A:R.14, A:R.14, A:R.14 Salt bridges: A:R.14

1 x J1Z: thieno[3,2-b]thiophene(Non-covalent)

J1Z.2: 10 residues within 4Å: Chain A: I.78, L.84, Y.88, A.99, Q.102, V.103, V.111, L.118, L.121, F.153 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.111

3 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.3: 3 residues within 4Å: Chain A: I.3, I.100 Ligands: BME.4 No protein-ligand interaction detected (PLIP) BME.4: 3 residues within 4Å: Chain A: L.79, Y.88 Ligands: BME.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.88 BME.5: 4 residues within 4Å: Chain A: G.30, H.31, L.32, D.70 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.70, A:D.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyce, S.E. et al., Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. J.Mol.Biol. (2009)

Release Date

2009-11-03

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme