SMTL ID : 3hur.1

Crystal structure of alanine racemase from Oenococcus oeni

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: Y.44, N.205, S.206, R.224, G.226, Q.227 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.44, A:S.206, A:S.206, A:G.226, A:Q.227 Water bridges: A:K.40 SO4.2: 6 residues within 4Å: Chain A: D.292, G.293, W.294, A.367, P.368, R.369 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.293, A:W.294, A:R.369 Salt bridges: A:R.369 SO4.3: 7 residues within 4Å: Chain A: A.41, D.42, S.67, N.68, E.71 Chain B: R.8, K.371 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Salt bridges: B:R.8, B:K.371 Hydrogen bonds: A:A.41, A:D.42, A:N.68 SO4.4: 6 residues within 4Å: Chain B: Y.44, N.205, S.206, R.224, G.226, Q.227 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.44, B:S.206, B:S.206, B:G.226, B:Q.227 Water bridges: B:K.40 SO4.5: 6 residues within 4Å: Chain B: D.292, G.293, W.294, A.367, P.368, R.369 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.293, B:W.294, B:R.369 Salt bridges: B:R.369 SO4.6: 7 residues within 4Å: Chain A: R.8, K.371 Chain B: A.41, D.42, S.67, N.68, E.71 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.8, A:K.371 Hydrogen bonds: B:A.41, B:D.42, B:N.68 SO4.7: 6 residues within 4Å: Chain C: Y.44, N.205, S.206, R.224, G.226, Q.227 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.206, C:S.206, C:G.226, C:Q.227 Water bridges: C:K.40 SO4.8: 6 residues within 4Å: Chain C: D.292, G.293, W.294, A.367, P.368, R.369 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:G.293, C:W.294, C:R.369 Salt bridges: C:R.369 SO4.9: 7 residues within 4Å: Chain C: A.41, D.42, S.67, N.68, E.71 Chain D: R.8, K.371 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:A.41, C:D.42, C:N.68, C:E.71 Salt bridges: D:R.8, D:K.371 SO4.10: 6 residues within 4Å: Chain D: Y.44, N.205, S.206, R.224, G.226, Q.227 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.206, D:S.206, D:G.226, D:Q.227 Water bridges: D:K.40 SO4.11: 6 residues within 4Å: Chain D: D.292, G.293, W.294, A.367, P.368, R.369 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.293, D:W.294, D:R.369 Salt bridges: D:R.369 SO4.12: 7 residues within 4Å: Chain C: R.8, K.371 Chain D: A.41, D.42, S.67, N.68, E.71 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:A.41, D:D.42, D:N.68, D:E.71 Salt bridges: C:R.8, C:K.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonanno, J.B. et al., Crystal structure of alanine racemase from Oenococcus oeni. To be Published

Release Date

2009-07-14

Peptides

Alanine racemase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Alanine racemase