SMTL ID : 3hvy.1

Crystal structure of putative cystathionine beta-lyase involved in aluminum resistance (NP_348457.1) from Clostridium acetobutylicum at 2.00 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: N.85, N.88 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.85 NA.7: 3 residues within 4Å: Chain B: N.85, N.88 Ligands: EDO.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.85 NA.13: 2 residues within 4Å: Chain C: N.85, N.88 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.88 NA.20: 2 residues within 4Å: Chain D: N.85, N.88 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.85 Water bridges: D:N.85, D:N.88

18 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: F.110, G.143, Y.148, R.270 Chain B: F.110, G.111, F.269, R.270 Ligands: EDO.3 Ligand excluded by PLIP EDO.3: 7 residues within 4Å: Chain A: F.110, Y.148, R.270 Chain B: F.110, Y.148, R.270 Ligands: EDO.2 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: Y.44, K.48, E.227, K.228, D.232 Ligand excluded by PLIP EDO.5: 7 residues within 4Å: Chain A: R.42, E.303, K.306, F.411 Chain C: R.42, H.299 Ligands: EDO.14 Ligand excluded by PLIP EDO.6: 7 residues within 4Å: Chain A: K.48, K.51, E.55, N.85, I.86, N.88 Ligands: NA.1 Ligand excluded by PLIP EDO.8: 10 residues within 4Å: Chain B: T.186, R.191, K.192, S.193, L.323, P.324, I.334, A.336, Y.404 Ligands: EDO.12 Ligand excluded by PLIP EDO.9: 6 residues within 4Å: Chain B: R.42, E.303, K.306, F.411 Chain D: R.42, H.299 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain B: K.48, A.52, N.85, I.86, N.88 Ligands: NA.7, EDO.11 Ligand excluded by PLIP EDO.11: 6 residues within 4Å: Chain B: Y.44, K.48, N.88, E.227, D.232 Ligands: EDO.10 Ligand excluded by PLIP EDO.12: 8 residues within 4Å: Chain B: K.192, S.193, R.195, P.324, D.328, K.329, T.331 Ligands: EDO.8 Ligand excluded by PLIP EDO.14: 7 residues within 4Å: Chain A: R.42, H.299 Chain C: R.42, E.303, K.306, F.411 Ligands: EDO.5 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain C: F.110, Y.148, R.270 Chain D: F.110, Y.148, R.270 Ligand excluded by PLIP EDO.16: 8 residues within 4Å: Chain C: K.192, S.193, R.195, P.324, D.328, K.329, T.331 Ligands: EDO.19 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain C: Y.44, K.48, N.88, E.227, K.228, D.232 Ligand excluded by PLIP EDO.18: 4 residues within 4Å: Chain C: A.318, G.319, F.320, I.426 Ligand excluded by PLIP EDO.19: 10 residues within 4Å: Chain C: T.186, R.191, K.192, S.193, L.323, P.324, I.334, A.336, Y.404 Ligands: EDO.16 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: R.42, H.299 Chain D: R.42, E.303, K.306, F.411 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain D: Y.44, K.48, N.88, E.227, K.228, D.232 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of putative cystathionine beta-lyase involved in aluminum resistance (NP_348457.1) from Clostridium acetobutylicum at 2.00 A resolution. To be published

Release Date

2009-06-30

Peptides

Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Cystathionine beta-lyase family protein, YNBB B.subtilis ortholog