SMTL ID : 3hwb.3 (2 other biounits)

Cation selective pathway of OmpF porin revealed by anomalous diffraction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

19 x RB: RUBIDIUM ION(Non-functional Binders)(Non-covalent)

RB.1: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.3: 3 residues within 4Å: Chain A: G.181, K.182, N.183 Ligand excluded by PLIP RB.4: 6 residues within 4Å: Chain A: Y.120, G.121, R.122, G.156, G.157, V.158 Ligand excluded by PLIP RB.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.10: 7 residues within 4Å: Chain A: Q.286, G.290, L.291, R.292, T.322, Y.323, Y.324 Ligand excluded by PLIP RB.11: 3 residues within 4Å: Chain A: M.136, T.322, Y.324 Ligand excluded by PLIP RB.12: 1 residues within 4Å: Chain A: D.312 Ligand excluded by PLIP RB.13: 4 residues within 4Å: Chain A: E.223, Q.225, G.228, N.229 Ligand excluded by PLIP RB.14: 3 residues within 4Å: Chain A: N.338, I.340, S.350 Ligand excluded by PLIP RB.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP RB.17: 1 residues within 4Å: Chain B: D.217 Ligand excluded by PLIP RB.18: 3 residues within 4Å: Chain B: N.338, I.340, S.350 Ligand excluded by PLIP RB.19: 3 residues within 4Å: Chain B: E.223, Q.225, G.228 Ligand excluded by PLIP RB.20: 1 residues within 4Å: Chain B: D.135 Ligand excluded by PLIP

2 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)

P6G.15: 5 residues within 4Å: Chain A: E.70, T.78, Y.80, K.111, R.162 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.111 P6G.21: 7 residues within 4Å: Chain B: Y.62, L.137, P.138, E.139, Y.324, S.330, Q.361 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.139, B:Q.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dhakshnamoorthy, B. et al., Cation-selective pathway of OmpF porin revealed by anomalous X-ray diffraction. J.Mol.Biol. (2010)

Release Date

2009-12-08

Peptides

Outer membrane protein F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein F

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