SMTL ID : 3hwr.1

Crystal structure of PanE/ApbA family ketopantoate reductase (YP_299159.1) from Ralstonia eutropha JMP134 at 2.15 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 20 residues within 4Å: Chain A: M.25, G.26, G.28, A.29, V.30, I.48, R.50, C.93, V.94, K.95, D.98, L.119, Q.120, N.121, V.142, V.144, A.145, T.146, K.197, E.279 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:V.30, A:V.144, A:K.197 Hydrogen bonds: A:A.29, A:V.30, A:R.50, A:V.94, A:D.98, A:N.121, A:N.121, A:T.146, A:T.146, A:T.146, A:E.279 Water bridges: A:G.28, A:K.95 Salt bridges: A:R.50 pi-Cation interactions: A:R.50, A:R.50 NDP.4: 19 residues within 4Å: Chain B: M.25, G.26, G.28, A.29, V.30, I.48, R.50, C.93, V.94, K.95, D.98, L.119, Q.120, N.121, V.142, V.144, A.145, T.146, E.279 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:V.30, B:V.142, B:V.144 Hydrogen bonds: B:A.29, B:V.30, B:V.94, B:S.96, B:N.121, B:T.146, B:T.146, B:E.279 Water bridges: B:G.28, B:G.31, B:R.50, B:R.50, B:K.95 Salt bridges: B:R.50, B:K.95 pi-Cation interactions: B:R.50, B:R.50

2 x BCN: BICINE(Non-covalent)

BCN.2: 9 residues within 4Å: Chain A: L.200, N.201, Y.204, N.205, Y.215, Q.264, S.265, S.266, S.267 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.200, A:N.205, A:Y.215, A:Q.264, A:S.265, A:S.267 BCN.5: 10 residues within 4Å: Chain B: L.200, N.201, Y.204, N.205, Y.215, M.261, Q.264, S.265, S.266, S.267 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.200, B:N.205, B:Y.215, B:Y.215, B:Q.264, B:S.265, B:S.267

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.3: 6 residues within 4Å: Chain A: Y.143, A.196, K.197, L.200, V.250, A.253 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.196, A:L.200, A:V.250, A:A.253 Hydrogen bonds: A:Y.143, A:Y.143 Water bridges: A:K.197, A:D.249 MRD.6: 5 residues within 4Å: Chain B: Y.143, A.193, A.196, K.197, A.253 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.143, B:A.196, B:A.253 Hydrogen bonds: B:A.193

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of PanE/ApbA family ketopantoate reductase (YP_299159.1) from Ralstonia eutropha JMP134 at 2.15 A resolution. To be published

Release Date

2009-06-30

Peptides

2-dehydropantoate 2-reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

2-dehydropantoate 2-reductase