SMTL ID : 3hyg.1 (1 other biounit)

Crystal Structure of the Catalytic Domain of ADAMTS-5 in Complex with an Amino-2-indanol compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.151, H.155, H.161 Ligands: 099.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.151, A:H.155, A:H.161

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: E.11, D.94, D.101, C.212, D.215 Ligands: CA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:D.94, A:D.101, A:C.212, H2O.1 CA.3: 4 residues within 4Å: Chain A: E.11, D.94, D.215 Ligands: CA.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.11, A:D.94, A:D.94, A:D.215, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.110, L.111, C.117, T.119, E.139 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.110, A:L.111, A:C.117, A:T.119, A:E.139, H2O.2

1 x 099: (2R)-N~4~-hydroxy-2-(3-hydroxybenzyl)-N~1~-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]butanediamide(Non-covalent)

099.5: 15 residues within 4Å: Chain A: D.118, T.119, L.120, G.121, T.148, H.151, E.152, H.155, H.161, L.179, S.181, S.182, I.183, L.184 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:D.118, A:T.119, A:I.183, A:L.184 Hydrogen bonds: A:G.121, A:G.121, A:S.182, A:L.184 Water bridges: A:L.179, A:T.185 pi-Stacking: A:H.151

Links

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Citation

Tortorella, M.D. et al., Structural and inhibition analysis reveals the mechanism of selectivity of a series of aggrecanase inhibitors. J.Biol.Chem. (2009)

Release Date

2009-07-07

Peptides

A disintegrin and metalloproteinase with thrombospondin motifs 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

A disintegrin and metalloproteinase with thrombospondin motifs 5

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