SMTL ID : 3hz6.1

Crystal structure of xylulokinase from Chromobacterium violaceum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 11 residues within 4Å: Chain A: G.264, T.265, G.307, N.308, Q.311, F.329, G.410, G.411, G.412, R.414, S.415 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:T.265, A:T.265, A:T.265, A:G.307, A:Q.311, A:G.411, A:G.412, A:R.414 Water bridges: A:T.265 pi-Stacking: A:F.329, A:F.329

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 4 residues within 4Å: Chain A: G.344, L.346, L.368, R.491 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.344, A:R.491

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.93, H.156, G.171, R.172, H.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.93, A:H.173 GOL.4: 6 residues within 4Å: Chain A: T.14, Q.82, M.83, Y.102, D.243 Ligands: XUL.6 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.14, A:T.14

1 x MLI: MALONATE ION(Non-functional Binders)

MLI.5: 4 residues within 4Å: Chain A: F.147, P.148, Q.149, A.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.149, A:A.150 Water bridges: A:R.153

1 x XUL: D-XYLULOSE(Non-covalent)

XUL.6: 9 residues within 4Å: Chain A: M.83, Q.84, T.182, A.244, W.268, F.287, V.300, P.302 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Water bridges: A:Q.84, A:V.303, A:R.355, A:R.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Z. et al., Crystal structure of xylulokinase from Chromobacterium violaceum. To be Published

Release Date

2009-07-21

Peptides

Xylulokinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Xylulokinase

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