SMTL ID : 3hzi.1

Structure of mdt protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.98 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: V.98, A.152, G.153, A.154, Q.155, K.157, I.179, K.181, V.233, E.234, R.235, F.236, D.237, Q.252, D.254, H.311, K.313, N.314, S.316, Y.331, D.332 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.154, A:Q.155, A:Q.155, A:Q.155, A:E.234, A:F.236, A:Q.252, A:D.254, A:K.313, A:S.316, A:S.316, A:Y.331, A:D.332 Salt bridges: A:K.157, A:K.181, A:K.181, A:H.311 pi-Stacking: A:F.236 pi-Cation interactions: A:R.235 ATP.11: 21 residues within 4Å: Chain D: V.98, A.152, G.153, A.154, Q.155, K.157, I.179, K.181, V.233, E.234, R.235, F.236, D.237, Q.252, D.254, H.311, K.313, N.314, S.316, Y.331, D.332 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:A.154, D:Q.155, D:Q.155, D:Q.155, D:E.234, D:F.236, D:Q.252, D:K.313, D:S.316, D:S.316, D:D.332, D:D.332 Salt bridges: D:K.157, D:K.181, D:K.181, D:H.311 pi-Stacking: D:F.236 pi-Cation interactions: D:R.235

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.39, R.239 Ligands: SO4.3 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: N.9, Q.11, Y.37, R.39 Ligands: SO4.2 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: Y.370, P.371, R.372, E.436 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: A.358, K.360, K.363, R.372, H.373 Ligand excluded by PLIP SO4.6: 2 residues within 4Å: Chain A: G.274, R.277 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain A: N.216, F.318, R.326, P.329 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: K.27, P.30, R.49 Ligand excluded by PLIP SO4.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain B: K.38, Q.39, A.40 Chain F: G.17, A.18 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain D: R.39, R.239 Ligands: SO4.13 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain D: N.9, Q.11, Y.37, R.39 Ligands: SO4.12 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain D: Y.370, P.371, R.372, E.436 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain D: A.358, K.360, K.363, R.372, H.373 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain D: G.274, R.277 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain D: N.216, F.318, R.326, P.329 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain D: K.27, P.30, R.49 Ligand excluded by PLIP SO4.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain C: G.17, A.18 Chain E: K.38, Q.39, A.40 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumacher, M.A. et al., Molecular mechanisms of HipA-mediated multidrug tolerance and its neutralization by HipB. Science (2009)

Release Date

2009-07-28

Peptides

Protein hipA: AD
HTH-type transcriptional regulator hipB: BE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
B

E
B

Protein hipA

HTH-type transcriptional regulator hipB

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