- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 25 x SIN: SUCCINIC ACID(Non-covalent)
SIN.3: 4 residues within 4Å:- Chain A: A.30, S.55, H.83
- Chain B: E.219
Ligand excluded by PLIPSIN.4: 5 residues within 4Å:- Chain A: A.61, A.64, K.65, E.75, L.79
Ligand excluded by PLIPSIN.5: 12 residues within 4Å:- Chain A: R.13, Y.14, S.15, L.154, V.157, A.158, L.162, D.163, A.164, V.165, P.166
- Ligands: MLI.15
Ligand excluded by PLIPSIN.6: 6 residues within 4Å:- Chain A: A.89, K.90, H.139, T.187, L.189
- Ligands: SIN.7
Ligand excluded by PLIPSIN.7: 6 residues within 4Å:- Chain A: E.168, S.188, L.189
- Chain B: D.137, K.144
- Ligands: SIN.6
Ligand excluded by PLIPSIN.8: 5 residues within 4Å:- Chain A: E.29, K.32, M.160
- Chain B: M.4, D.5
Ligand excluded by PLIPSIN.9: 6 residues within 4Å:- Chain A: E.99, V.102, D.103, K.117, A.118, D.121
Ligand excluded by PLIPSIN.10: 4 residues within 4Å:- Chain A: T.215
- Chain B: W.97, R.100, Y.186
Ligand excluded by PLIPSIN.11: 4 residues within 4Å:- Chain A: D.106, A.107, D.108, G.109
Ligand excluded by PLIPSIN.23: 7 residues within 4Å:- Chain A: P.41, R.110
- Chain B: R.13, Y.14, S.15, K.208, R.210
Ligand excluded by PLIPSIN.24: 6 residues within 4Å:- Chain A: M.130
- Chain B: Y.71, E.168, F.170, D.171, A.172
Ligand excluded by PLIPSIN.25: 6 residues within 4Å:- Chain B: D.5, S.8, V.9, Q.12, A.158
- Ligands: MLI.32
Ligand excluded by PLIPSIN.26: 6 residues within 4Å:- Chain A: V.220
- Chain B: R.62, E.178, F.179, G.180, K.184
Ligand excluded by PLIPSIN.27: 12 residues within 4Å:- Chain B: R.13, Y.14, S.15, L.154, V.157, A.158, L.162, D.163, A.164, V.165, P.166
- Ligands: MLI.32
Ligand excluded by PLIPSIN.28: 3 residues within 4Å:- Chain B: K.17, F.73, K.77
Ligand excluded by PLIPSIN.29: 7 residues within 4Å:- Chain A: E.219
- Chain B: A.30, K.34, V.53, S.55, H.83
- Ligands: TLA.1
Ligand excluded by PLIPSIN.37: 6 residues within 4Å:- Chain C: Q.140, A.143, K.144
- Chain D: Q.140, A.143, K.144
Ligand excluded by PLIPSIN.38: 3 residues within 4Å:- Chain C: R.62, F.179, K.184
Ligand excluded by PLIPSIN.39: 6 residues within 4Å:- Chain C: R.100, D.103, Q.104
- Chain D: L.211, P.212, T.215
Ligand excluded by PLIPSIN.40: 8 residues within 4Å:- Chain A: D.20, K.23, H.197, S.198, V.199
- Chain C: T.72, F.73, R.76
Ligand excluded by PLIPSIN.41: 6 residues within 4Å:- Chain C: D.106, F.111, A.112, T.113, P.114, K.117
Ligand excluded by PLIPSIN.42: 4 residues within 4Å:- Chain C: T.35, Q.38
- Chain D: L.213
- Ligands: FLC.48
Ligand excluded by PLIPSIN.50: 5 residues within 4Å:- Chain C: V.220
- Chain D: R.62, E.178, F.179, K.184
Ligand excluded by PLIPSIN.51: 3 residues within 4Å:- Chain D: A.204, L.206
- Ligands: MLI.54
Ligand excluded by PLIPSIN.52: 11 residues within 4Å:- Chain D: R.13, Y.14, S.15, L.154, V.157, A.158, L.162, D.163, A.164, V.165, P.166
Ligand excluded by PLIP- 14 x MLI: MALONATE ION(Non-functional Binders)
MLI.12: 10 residues within 4Å:- Chain A: R.13, Y.14, S.15, N.203, K.208, R.210
- Chain B: P.41, R.110
- Ligands: CL.18, CL.35
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.15, A:S.15, A:N.203
- Salt bridges: A:R.13, A:K.208, A:K.208, A:R.210, B:R.110
- Water bridges: B:R.110
MLI.13: 4 residues within 4Å:- Chain A: M.4, D.5
- Chain B: A.3, M.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.5
MLI.14: 8 residues within 4Å:- Chain A: F.73, N.74, P.166, I.167, E.168, G.169
- Chain B: S.43, F.127
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:I.167, A:E.168
- Hydrogen bonds: A:N.74, A:E.168, A:G.169
MLI.15: 8 residues within 4Å:- Chain A: V.9, Q.12, R.13, A.158, G.161, L.162, D.163
- Ligands: SIN.5
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:R.13
- Hydrogen bonds: A:A.158, A:G.161
MLI.30: 7 residues within 4Å:- Chain B: A.89, K.90, T.91, H.139, M.142, T.187, L.189
7 PLIP interactions:6 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:A.89, B:H.139, B:T.187
- Water bridges: B:T.187, B:S.188, A:K.144
- Salt bridges: B:H.139
MLI.31: 5 residues within 4Å:- Chain A: K.34
- Chain B: L.213, E.214, L.217, E.219
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:L.217
- Water bridges: B:L.213, B:E.219, A:D.31
- Salt bridges: A:K.34
MLI.32: 8 residues within 4Å:- Chain B: Q.12, R.13, A.158, G.161, L.162, D.163
- Ligands: SIN.25, SIN.27
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.12, B:G.161
MLI.43: 7 residues within 4Å:- Chain A: F.73, R.76
- Chain C: F.19, R.76, D.80, S.198, E.200
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: A:R.76
- Water bridges: A:K.17, A:R.76, C:F.19, C:R.76
- Hydrogen bonds: C:S.198, C:E.200
MLI.44: 10 residues within 4Å:- Chain A: E.200
- Chain C: F.73, N.74, K.77, V.165, P.166, I.167, E.168, G.169
- Chain D: F.127
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.74, C:N.74, C:P.166, C:E.168, C:G.169
- Salt bridges: C:K.17, C:K.77
MLI.45: 7 residues within 4Å:- Chain C: R.13, Y.14, S.15, N.203, K.208, R.210
- Chain D: R.110
10 PLIP interactions:7 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:S.15, C:S.15, C:N.203
- Salt bridges: C:R.13, C:K.208, C:K.208, C:R.210, D:R.110
- Water bridges: D:S.42, D:R.110
MLI.46: 6 residues within 4Å:- Chain C: L.11, Q.12, R.13, A.204, L.206, K.208
No protein-ligand interaction detected (PLIP)MLI.53: 6 residues within 4Å:- Chain C: R.110
- Chain D: R.13, Y.14, S.15, K.208, R.210
14 PLIP interactions:9 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:S.15, D:S.15
- Water bridges: D:S.15, D:R.210, D:R.210, C:R.110, C:R.110, C:R.110, C:R.110
- Salt bridges: D:R.13, D:K.208, D:K.208, D:R.210, C:R.110
MLI.54: 2 residues within 4Å:- Chain D: G.205
- Ligands: SIN.51
No protein-ligand interaction detected (PLIP)MLI.55: 7 residues within 4Å:- Chain C: K.32, M.160
- Chain D: M.4, D.5, I.6, V.7, S.8
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:D.5, D:V.7, D:S.8
- Salt bridges: C:K.32, C:K.32
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.16: 5 residues within 4Å:- Chain A: L.11, Q.12, A.204, L.206, K.208
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:K.208
ACT.33: 6 residues within 4Å:- Chain B: D.176, A.177, G.180, L.181, K.182, E.183
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:K.182, B:E.183
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.17: 3 residues within 4Å:- Chain A: P.212, L.213
- Chain B: Q.38
Ligand excluded by PLIPCL.18: 6 residues within 4Å:- Chain A: K.208, S.209, R.210
- Chain B: R.110
- Ligands: MLI.12, CL.35
Ligand excluded by PLIPCL.19: 4 residues within 4Å:- Chain A: R.100
- Chain B: L.211, P.212, T.215
Ligand excluded by PLIPCL.20: 3 residues within 4Å:- Chain A: A.96, W.97, R.100
Ligand excluded by PLIPCL.34: 4 residues within 4Å:- Chain A: Y.39
- Chain B: A.10, R.13, K.208
Ligand excluded by PLIPCL.35: 5 residues within 4Å:- Chain B: N.45, E.105, R.110
- Ligands: MLI.12, CL.18
Ligand excluded by PLIPCL.47: 5 residues within 4Å:- Chain C: R.13, Y.14, L.154, A.164, V.165
Ligand excluded by PLIPCL.56: 2 residues within 4Å:- Chain D: A.30, H.83
Ligand excluded by PLIP- 2 x NA: SODIUM ION(Non-functional Binders)
- 1 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Anderson, S.M. et al., Structure of the Salmonella typhimurium nfnB dihydropteridine reductase. TO BE PUBLISHED
- Release Date
- 2009-07-07
- Peptides
- Oxygen-insensitive NAD(P)H nitroreductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.40 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 25 x SIN: SUCCINIC ACID(Non-covalent)
- 14 x MLI: MALONATE ION(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 1 x FLC: CITRATE ANION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Anderson, S.M. et al., Structure of the Salmonella typhimurium nfnB dihydropteridine reductase. TO BE PUBLISHED
- Release Date
- 2009-07-07
- Peptides
- Oxygen-insensitive NAD(P)H nitroreductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
AD
B