SMTL ID : 3hzs.1

S. aureus monofunctional glycosyltransferase (MtgA)in complex with moenomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

3 x M0E: MOENOMYCIN(Non-covalent)

M0E.1: 25 residues within 4Å: Chain A: Q.41, S.73, Q.78, K.81, N.82, D.86, R.89, S.90, F.91, K.94, Y.122, G.124, D.125, V.164, N.165, A.166, P.167, S.168, V.169 Chain B: D.88, R.89, S.90 Chain C: N.178 Ligands: M0E.3, M0E.5 37 PLIP interactions: 31 interactions with chain A, 2 interactions with chain C, 4 interactions with chain B Hydrophobic interactions: A:F.91, A:Y.122, A:V.169, B:D.88 Hydrogen bonds: A:Q.41, A:Q.78, A:K.81, A:N.82, A:D.86, A:R.89, A:D.125, A:V.164, A:N.165, A:S.168, A:S.168, A:S.168, A:V.169, C:N.178, B:R.89 Water bridges: A:G.72, A:G.72, A:S.73, A:S.73, A:Q.78, A:Q.78, A:K.94, A:N.126, C:E.177, B:R.89, B:S.90 Salt bridges: A:K.81, A:K.81, A:K.81, A:K.81, A:R.89, A:R.89, A:K.94 M0E.3: 25 residues within 4Å: Chain A: N.178 Chain B: Q.41, S.73, Q.78, K.81, N.82, D.86, R.89, S.90, F.91, K.94, Y.122, G.124, D.125, V.164, N.165, A.166, P.167, S.168, V.169 Chain C: D.88, R.89, S.90 Ligands: M0E.1, M0E.5 37 PLIP interactions: 31 interactions with chain B, 4 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: B:F.91, B:Y.122, B:V.169, C:D.88 Hydrogen bonds: B:Q.41, B:Q.78, B:K.81, B:N.82, B:D.86, B:R.89, B:D.125, B:V.164, B:N.165, B:S.168, B:S.168, B:S.168, B:V.169, C:R.89, A:N.178 Water bridges: B:G.72, B:G.72, B:S.73, B:S.73, B:Q.78, B:Q.78, B:K.94, B:N.126, C:R.89, C:S.90, A:E.177 Salt bridges: B:K.81, B:K.81, B:K.81, B:K.81, B:R.89, B:R.89, B:K.94 M0E.5: 25 residues within 4Å: Chain A: D.88, R.89, S.90 Chain B: N.178 Chain C: Q.41, S.73, Q.78, K.81, N.82, D.86, R.89, S.90, F.91, K.94, Y.122, G.124, D.125, V.164, N.165, A.166, P.167, S.168, V.169 Ligands: M0E.1, M0E.3 37 PLIP interactions: 4 interactions with chain A, 31 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: A:D.88, C:F.91, C:Y.122, C:V.169 Hydrogen bonds: A:R.89, C:Q.41, C:Q.78, C:K.81, C:N.82, C:D.86, C:R.89, C:D.125, C:V.164, C:N.165, C:S.168, C:S.168, C:S.168, C:V.169, B:N.178 Water bridges: A:R.89, A:S.90, C:G.72, C:G.72, C:S.73, C:S.73, C:Q.78, C:Q.78, C:K.94, C:N.126, B:E.177 Salt bridges: C:K.81, C:K.81, C:K.81, C:K.81, C:R.89, C:R.89, C:K.94

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: H.48, H.49, G.50, F.51, D.52, L.53 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:H.48, A:H.49, A:H.49, A:F.51, A:D.52, A:L.53 Water bridges: A:K.54 PO4.4: 6 residues within 4Å: Chain B: H.48, H.49, G.50, F.51, D.52, L.53 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:H.48, B:H.49, B:H.49, B:F.51, B:D.52, B:L.53 Water bridges: B:K.54 PO4.6: 6 residues within 4Å: Chain C: H.48, H.49, G.50, F.51, D.52, L.53 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:H.48, C:H.49, C:H.49, C:F.51, C:D.52, C:L.53 Water bridges: C:K.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heaslet, H. et al., Characterization of the active site of S. aureus monofunctional glycosyltransferase (Mtg) by site-directed mutation and structural analysis of the protein complexed with moenomycin. J.Struct.Biol. (2009)

Release Date

2009-07-07

Peptides

Monofunctional glycosyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Monofunctional glycosyltransferase