SMTL ID : 3hzt.1

Crystal structure of Toxoplasma gondii CDPK3, TGME49_105860

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.324, N.326, D.328, Q.330, Y.377 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.324, A:D.328, A:Q.330, A:Y.377, H2O.3

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: E.54, N.124, I.125, V.126, G.152, L.153, S.154, A.155, H.156 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.126, A:L.153, A:S.154, A:A.155 Water bridges: A:G.152, A:S.154 GOL.3: 7 residues within 4Å: Chain A: K.35, M.67, L.81, M.83, D.150, F.151, L.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.150 GOL.4: 4 residues within 4Å: Chain A: T.44, S.46, N.47, S.48 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.44, A:T.44, A:S.48 GOL.5: 4 residues within 4Å: Chain A: G.49, L.52, D.53, A.56 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.49, A:D.53 GOL.7: 4 residues within 4Å: Chain A: R.87, G.89, K.140 Ligands: J60.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.140 Water bridges: A:G.89 GOL.8: 7 residues within 4Å: Chain A: S.14, E.90, E.133, N.134, L.136, V.149 Ligands: J60.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.14, A:E.90, A:E.90, A:N.134 Water bridges: A:S.14, A:E.90 GOL.9: 5 residues within 4Å: Chain A: D.183, E.184, K.185, P.248, S.249 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.184, A:K.185, A:P.248 Water bridges: A:D.183 GOL.10: 7 residues within 4Å: Chain A: Y.17, G.18, E.19, I.36, I.37, K.38, S.41 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.19, A:E.19, A:E.19, A:K.38, A:K.38, A:S.41, A:S.41

1 x J60: 5-[(E)-(5-CHLORO-2-OXO-1,2-DIHYDRO-3H-INDOL-3-YLIDENE)METHYL]-N-[2-(DIETHYLAMINO)ETHYL]-2,4-DIMETHYL-1H-PYRROLE-3-CARBOXAMIDE(Non-covalent)

J60.6: 15 residues within 4Å: Chain A: K.11, L.12, A.33, M.67, M.83, E.84, V.85, Y.86, L.136, V.149, D.150, L.301, R.398 Ligands: GOL.7, GOL.8 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.12, A:M.83, A:L.136, A:V.149, A:L.301 Hydrogen bonds: A:E.84, A:Y.86, A:Y.86 Halogen bonds: A:D.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wernimont, A.K. et al., Structures of apicomplexan calcium-dependent protein kinases reveal mechanism of activation by calcium. Nat.Struct.Mol.Biol. (2010)

Release Date

2009-07-21

Peptides

Calcium-dependent protein kinase 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Calcium-dependent protein kinase 3