SMTL ID : 3hzv.1

Crystal structure of S73-2 antibody in complex with antigen Kdo(2.8)Kdo(2.4)Kdo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KDA- KDO- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-8)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid(Non-covalent)

KDA-KDO-KDO.1: 11 residues within 4Å: Chain A: N.31, R.33, S.97, Y.98, R.101 Chain B: Y.33, R.52, K.56, I.102, P.104, D.111 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:P.104 Hydrogen bonds: B:Y.33, B:Y.33, B:K.56, A:N.31, A:Y.98 Salt bridges: B:K.56 Water bridges: A:R.33, A:R.33

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: N.143, D.172, D.175 Chain B: H.177 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.177 MG.3: 2 residues within 4Å: Chain A: E.190, H.194 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 1 residues within 4Å: Chain B: E.61 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.61, B:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brooks, C.L. et al., Antibodies raised against chlamydial lipopolysaccharide antigens reveal convergence in germline gene usage and differential epitope recognition. Biochemistry (2010)

Release Date

2010-01-12

Peptides

S73-2 Fab (IgG1k) light chain: A
S73-2 Fab (IgG1k) heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S73-2 Fab (IgG1k) light chain

S73-2 Fab (IgG1k) heavy chain

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