SMTL ID : 3i02.1 (1 other biounit)

Crystal structure of S54-10 antibody in complex with antigen Kdo(2.4)Kdo(2.4)Kdo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x KDA- KDO- KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-4)-prop-2-en-1-yl 3-deoxy-alpha-D-manno-oct-2-ulopyranosidonic acid

KDA-KDO-KDO.1: 12 residues within 4Å: Chain A: N.31, R.33, S.97, Y.98, R.101 Chain B: Y.33, F.50, R.52, K.56, M.102, F.105, D.109 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:N.31, A:R.33, A:S.97, A:R.101, A:R.101, B:Y.33, B:D.109 Water bridges: A:R.33, A:L.100 Salt bridges: A:R.33, B:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brooks, C.L. et al., Antibodies raised against chlamydial lipopolysaccharide antigens reveal convergence in germline gene usage and differential epitope recognition. Biochemistry (2010)

Release Date

2010-01-12

Peptides

Immunoglobulin light chain: A
Immunoglobulin heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Immunoglobulin light chain

Immunoglobulin heavy chain

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