SMTL ID : 3i09.1 (1 other biounit)

CRYSTAL STRUCTURE OF A PERIPLASMIC BINDING PROTEIN (BMA2936) FROM BURKHOLDERIA MALLEI AT 1.80 A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x AAE: ACETOACETIC ACID(Non-functional Binders)

AAE.1: 12 residues within 4Å: Chain A: Y.17, I.20, T.79, N.80, S.81, G.102, A.103, G.104, Y.122, Y.150, F.152, A.204 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.17, A:I.20, A:F.152, A:A.204 Hydrogen bonds: A:N.80, A:S.81, A:G.104, A:Y.122, A:Y.150

3 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 10 residues within 4Å: Chain A: G.1, A.2, D.3, S.4, K.6, E.46, R.69, G.70, G.71 Ligands: CIT.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.2, A:D.3, A:S.4 Water bridges: A:D.3 Salt bridges: A:K.6 CIT.3: 8 residues within 4Å: Chain A: A.2, M.67, D.68, R.69, G.70, G.71 Ligands: CIT.2, CIT.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.2, A:G.71 CIT.4: 8 residues within 4Å: Chain A: G.1, K.43, G.71, L.72, D.73, K.96, T.300 Ligands: CIT.3 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.1, A:G.1, A:G.1, A:T.300 Water bridges: A:K.43, A:D.73, A:D.73, A:D.73, A:K.96 Salt bridges: A:K.43, A:K.43, A:K.96

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 6 residues within 4Å: Chain A: D.19, I.20, G.206, V.209, N.234, D.235 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.235 EDO.6: 6 residues within 4Å: Chain A: K.320, G.321, I.330, H.331, D.332, G.359 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.332, A:G.359 Water bridges: A:G.321, A:D.332, A:E.360 EDO.7: 2 residues within 4Å: Chain A: H.237, W.348 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.237 EDO.8: 5 residues within 4Å: Chain A: K.30, V.33, I.45, E.46, V.47 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.47 Water bridges: A:K.30, A:K.30 EDO.9: 4 residues within 4Å: Chain A: K.95, D.301, S.302, D.303 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.116, A:Y.116, A:D.301, A:S.302, A:D.303 Water bridges: A:K.95, A:D.303, A:D.303 EDO.10: 3 residues within 4Å: Chain A: K.55, A.56, D.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.56, A:D.57, A:D.57 EDO.11: 3 residues within 4Å: Chain A: A.260, D.316, F.317 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.261, A:D.316, A:F.317 EDO.12: 3 residues within 4Å: Chain A: L.373, W.374, K.375 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.375 Water bridges: A:W.374

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of Periplasmic Binding Protein BMA293 (YP_104442.1) from Burkholderia mallei ATCC 23344 at 1.80 A resolution. To be published

Release Date

2009-07-21

Peptides

Periplasmic branched-chain amino acid-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Periplasmic branched-chain amino acid-binding protein

Related Entries With Identical Sequence