SMTL ID : 3i0w.1

Crystal structure of Clostridium acetobutylicum 8-oxoguanine glycosylase/lyase in complex with dsDNA containing cytosine opposite to 8-oxoG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.50, V.51, N.65, L.148, E.149 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.51, A:V.51, A:N.65 Water bridges: A:E.149 EDO.2: 5 residues within 4Å: Chain A: F.48, D.114, P.115, K.202 Ligands: EDO.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.114, A:D.114, A:K.202, A:K.202 EDO.3: 5 residues within 4Å: Chain A: F.48, V.74, Y.78, R.112 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.112 EDO.4: 4 residues within 4Å: Chain A: E.142, I.154, Y.155, Y.156 2 PLIP interactions: 2 interactions with chain A Water bridges: A:I.154, A:Y.156 EDO.5: 4 residues within 4Å: Chain A: E.22, L.23, K.24, K.56 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.23, A:K.24 Water bridges: A:D.25

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: K.214, F.216, V.219 Chain B: C.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.216, A:V.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faucher, F. et al., Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase. Dna Repair (2009)

Release Date

2009-09-29

Peptides

8-oxoguanine-DNA-glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

8-oxoguanine-DNA-glycosylase