- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 7 residues within 4Å:- Chain A: R.41, E.303, K.306, F.411
- Chain B: R.41, H.299
- Ligands: EDO.8
Ligand excluded by PLIPEDO.3: 12 residues within 4Å:- Chain A: F.109, M.141, G.142, F.147, R.270
- Chain D: F.109, G.110, R.113, Y.269, R.270, P.274
- Ligands: EDO.21
Ligand excluded by PLIPEDO.4: 4 residues within 4Å:- Chain A: R.288, S.289, Q.292
- Chain B: I.250
Ligand excluded by PLIPEDO.5: 5 residues within 4Å:- Chain A: E.59, F.62
- Chain C: T.63, N.64, S.65
Ligand excluded by PLIPEDO.7: 12 residues within 4Å:- Chain B: F.109, M.141, G.142, F.147, R.270
- Chain C: F.109, G.110, R.113, Y.269, R.270, P.274
- Ligands: EDO.14
Ligand excluded by PLIPEDO.8: 7 residues within 4Å:- Chain A: R.41, H.299
- Chain B: R.41, E.303, K.306, F.411
- Ligands: EDO.2
Ligand excluded by PLIPEDO.9: 5 residues within 4Å:- Chain A: I.250, I.384
- Chain B: R.288, S.289, Q.292
Ligand excluded by PLIPEDO.10: 7 residues within 4Å:- Chain B: G.160, K.161, R.192, A.193, L.194, L.195, D.198
Ligand excluded by PLIPEDO.11: 6 residues within 4Å:- Chain B: D.262, E.265, K.266
- Chain C: S.139, N.140, M.141
Ligand excluded by PLIPEDO.13: 7 residues within 4Å:- Chain C: R.41, E.303, K.306, F.411
- Chain D: R.41, H.299
- Ligands: EDO.23
Ligand excluded by PLIPEDO.14: 8 residues within 4Å:- Chain B: F.109, F.147, R.270
- Chain C: F.109, F.147, R.270
- Ligands: EDO.7, EDO.15
Ligand excluded by PLIPEDO.15: 12 residues within 4Å:- Chain B: F.109, G.110, R.113, Y.269, R.270, P.274
- Chain C: F.109, M.141, G.142, F.147, R.270
- Ligands: EDO.14
Ligand excluded by PLIPEDO.16: 6 residues within 4Å:- Chain C: E.265, S.268, Y.269, G.277, G.278, E.279
Ligand excluded by PLIPEDO.17: 5 residues within 4Å:- Chain C: R.288, S.289, Q.292
- Chain D: I.250, I.384
Ligand excluded by PLIPEDO.18: 5 residues within 4Å:- Chain C: A.80, A.83, E.89, S.90, A.91
Ligand excluded by PLIPEDO.19: 7 residues within 4Å:- Chain B: S.139, N.140, M.141
- Chain C: D.262, E.265, K.266, Y.269
Ligand excluded by PLIPEDO.21: 8 residues within 4Å:- Chain A: F.109, F.147, R.270
- Chain D: F.109, F.147, R.270
- Ligands: EDO.3, EDO.22
Ligand excluded by PLIPEDO.22: 11 residues within 4Å:- Chain A: F.109, G.110, R.113, Y.269, R.270
- Chain D: F.109, M.141, G.142, F.147, R.270
- Ligands: EDO.21
Ligand excluded by PLIPEDO.23: 7 residues within 4Å:- Chain C: R.41, H.299
- Chain D: R.41, E.303, K.306, F.411
- Ligands: EDO.13
Ligand excluded by PLIPEDO.24: 5 residues within 4Å:- Chain C: I.250, I.384
- Chain D: R.288, S.289, Q.292
Ligand excluded by PLIP- 1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
PLP.6: 12 residues within 4Å:- Chain B: N.99, G.100, T.101, L.104, Y.126, Q.183, S.185, D.218, C.220, Y.221, K.244
- Chain C: Y.68
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:Y.126, B:Q.183
- Hydrogen bonds: B:N.99, B:G.100, B:T.101, B:S.241, C:Y.68
- Water bridges: B:K.244
- Salt bridges: B:K.244
- pi-Stacking: B:Y.126
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of carbon-sulfur lyase involved in aluminum resistance (YP_878183.1) from Clostridium novyi NT at 2.00 A resolution. To be published
- Release Date
- 2009-07-21
- Peptides
- Aluminum resistance protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Joint Center for Structural Genomics (JCSG), Crystal structure of carbon-sulfur lyase involved in aluminum resistance (YP_878183.1) from Clostridium novyi NT at 2.00 A resolution. To be published
- Release Date
- 2009-07-21
- Peptides
- Aluminum resistance protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D