SMTL ID : 3i2j.1

Cocaine Esterase, wild type, without a ligand

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-dimer

Ligands

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: R.297, K.298, R.472 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: E.344, W.345 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain A: R.556 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: R.182 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: I.500, H.563 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain A: R.28 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: R.297, K.298, R.472 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: E.344, W.345 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain B: R.556 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain B: R.182 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain B: I.500, H.563 Ligand excluded by PLIP CL.20: 1 residues within 4Å: Chain B: R.28 Ligand excluded by PLIP

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: L.196, N.197, D.198, V.199, F.408, H.409, N.410 Chain B: R.293 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:V.199, A:H.409, A:N.410, B:R.293, B:R.293 Water bridges: A:L.196, A:N.197, A:G.201, A:F.408, A:F.408, A:N.410, A:G.411 GOL.4: 6 residues within 4Å: Chain A: D.394, A.396, L.547, M.550, C.551, T.552 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.394, A:E.548 Water bridges: A:E.548, A:M.550, A:T.552, A:T.552 GOL.5: 6 residues within 4Å: Chain A: V.281, P.306, E.309, A.310, R.336, W.345 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.309, A:E.309, A:R.336, A:W.345 Water bridges: A:A.310 GOL.13: 8 residues within 4Å: Chain A: R.293 Chain B: L.196, N.197, D.198, V.199, F.408, H.409, N.410 12 PLIP interactions: 3 interactions with chain A, 9 interactions with chain B Hydrogen bonds: A:R.293, A:R.293, B:V.199, B:H.409, B:N.410 Water bridges: A:R.293, B:L.196, B:N.197, B:G.201, B:F.408, B:N.410, B:G.411 GOL.14: 6 residues within 4Å: Chain B: D.394, A.396, L.547, M.550, C.551, T.552 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.394, B:E.548, B:E.548 Water bridges: B:E.548, B:M.550, B:T.552, B:T.552 GOL.15: 6 residues within 4Å: Chain B: V.281, P.306, E.309, A.310, R.336, W.345 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.309, B:R.336, B:W.345 Water bridges: B:A.310

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 6 residues within 4Å: Chain A: G.364, G.365, S.383, G.384, T.385, R.559 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.365, A:G.365, A:G.384, A:T.385, A:R.559 Water bridges: A:T.377, A:S.383 SO4.16: 6 residues within 4Å: Chain B: G.364, G.365, S.383, G.384, T.385, R.559 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.365, B:G.365, B:G.384, B:T.385, B:T.385, B:R.559 Water bridges: B:S.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Narasimhan, D. et al., Structural analysis of thermostabilizing mutations of cocaine esterase. Protein Eng.Des.Sel. (2010)

Release Date

2010-06-16

Peptides

Cocaine esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cocaine esterase

Related Entries With Identical Sequence