SMTL ID : 3i4q.1

Structure of a putative inorganic pyrophosphatase from the oil-degrading bacterium Oleispira antarctica

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-hexamer

Ligands

12 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.67, D.72, D.104, K.106 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.106, A:K.106 NA.2: 4 residues within 4Å: Chain A: K.144, D.145, E.147, K.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.145, A:K.150 NA.3: 4 residues within 4Å: Chain B: D.67, D.72, D.104, K.106 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.67, B:K.106 NA.4: 4 residues within 4Å: Chain B: K.144, D.145, E.147, K.150 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.144, B:K.150 NA.5: 4 residues within 4Å: Chain C: D.67, D.72, D.104, K.106 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.106, C:K.106 NA.6: 4 residues within 4Å: Chain C: K.144, D.145, E.147, K.150 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:E.147, C:K.150 NA.7: 4 residues within 4Å: Chain D: D.67, D.72, D.104, K.106 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.104, D:K.106 NA.8: 4 residues within 4Å: Chain D: K.144, D.145, E.147, K.150 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:E.147, D:K.150 NA.9: 4 residues within 4Å: Chain E: D.67, D.72, D.104, K.106 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.106, E:K.106 NA.10: 4 residues within 4Å: Chain E: K.144, D.145, E.147, K.150 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:E.147, E:K.150 NA.11: 4 residues within 4Å: Chain F: D.67, D.72, D.104, K.106 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:D.104, F:K.106 NA.12: 4 residues within 4Å: Chain F: K.144, D.145, E.147, K.150 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:K.144, F:K.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kube, M. et al., Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica. Nat Commun (2013)

Release Date

2009-07-28

Peptides

APC40078: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

APC40078