SMTL ID : 3i51.1

Crystal structure determination of Catechol 1,2-Dioxygenase from Rhodococcus opacus 1CP in complex with 4,5-dichlorocatechol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: Y.152, H.210, H.212 Ligands: 45C.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:Y.152, A:H.210, A:H.212 FE.4: 4 residues within 4Å: Chain B: Y.152, H.210, H.212 Ligands: 45C.5 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:Y.152, B:H.210, B:H.212

2 x 45C: 4,5-dichlorobenzene-1,2-diol(Non-covalent)

45C.2: 15 residues within 4Å: Chain A: L.67, D.70, V.71, I.92, G.94, P.95, Y.96, Y.152, Y.186, I.188, R.207, H.210, H.212, A.240 Ligands: FE.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.96 Hydrogen bonds: A:R.207 pi-Stacking: A:Y.186 pi-Cation interactions: A:R.207 45C.5: 15 residues within 4Å: Chain B: L.67, D.70, V.71, I.92, G.94, P.95, Y.96, Y.152, Y.186, I.188, R.207, H.210, H.212, A.240 Ligands: FE.4 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.96 Hydrogen bonds: B:R.207 pi-Stacking: B:Y.186 pi-Cation interactions: B:R.207

2 x 6PL: (4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE(Non-covalent)

6PL.3: 16 residues within 4Å: Chain A: A.15, T.16, A.17, T.19, I.27 Chain B: L.35, V.38, I.39, E.48, V.51, F.52, W.55, F.68, L.69, F.197 Ligands: 6PL.6 12 PLIP interactions: 2 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:I.27, B:V.38, B:I.39, B:E.48, B:F.52, B:F.52, B:F.52, B:W.55, B:W.55, B:L.69, B:F.197 Hydrogen bonds: A:A.17 6PL.6: 16 residues within 4Å: Chain A: L.35, V.38, I.39, E.48, V.51, F.52, W.55, F.68, L.69, F.197 Chain B: A.15, T.16, A.17, T.19, I.27 Ligands: 6PL.3 12 PLIP interactions: 10 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:V.38, A:I.39, A:E.48, A:F.52, A:F.52, A:F.52, A:W.55, A:W.55, A:L.69, A:F.197, B:I.27 Hydrogen bonds: B:A.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matera, I. et al., Catechol 1,2-dioxygenase from the Gram-positive Rhodococcus opacus 1CP: Quantitative structure/activity relationship and the crystal structures of native enzyme and catechols adducts. J.Struct.Biol. (2010)

Release Date

2010-01-12

Peptides

Catechol 1,2-dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Catechol 1,2-dioxygenase

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