SMTL ID : 3i5k.1 (3 other biounits)

Crystal structure of the NS5B polymerase from Hepatitis C Virus (HCV) strain JFH1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: Y.4, R.48, R.158, L.159, S.282 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:L.159, A:L.159, A:L.159, A:S.282 Water bridges: A:D.225, A:D.225 Salt bridges: A:R.48 PO4.2: 6 residues within 4Å: Chain A: W.6, A.9, I.11, S.46, A.49, K.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.9, A:A.9 Water bridges: A:G.8 Salt bridges: A:K.50 PO4.3: 5 residues within 4Å: Chain A: R.48, K.51, T.221, R.222, C.223 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.221, A:C.223 Water bridges: A:K.51, A:K.51, A:F.224, A:F.224 Salt bridges: A:R.48, A:K.51 PO4.4: 2 residues within 4Å: Chain A: R.379, R.380 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.380 Salt bridges: A:R.380 PO4.5: 1 residues within 4Å: Chain A: R.231 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.231 Salt bridges: A:R.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simister, P. et al., Structural and functional analysis of hepatitis C virus strain JFH1 polymerase. J.Virol. (2009)

Release Date

2009-09-22

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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