SMTL ID : 3i61.1

Structure of Mss116p bound to ssRNA and ADP-Beryllium Fluoride

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: F.92, G.94, L.95, T.96, Q.99, K.119, T.120, G.121, T.122, G.123, K.124, T.125, F.126, D.407, R.435, S.436 Ligands: BEF.2, MG.3 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:G.94, A:T.96, A:Q.99, A:K.119, A:G.121, A:T.122, A:G.123, A:K.124, A:T.125, A:T.125, A:T.125, A:D.407 Water bridges: A:G.94, A:G.94, A:F.126, A:Q.161, A:E.165, A:E.165, A:E.165, A:E.165, A:R.435, A:S.436 Salt bridges: A:K.124, A:R.435, A:R.435 pi-Stacking: A:F.92, A:F.92

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 9 residues within 4Å: Chain A: T.120, G.121, K.124, E.234, G.405, R.432, R.435 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: T.125, D.233, E.234 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Campo, M. et al., Structure of the Yeast DEAD box protein Mss116p reveals two wedges that crimp RNA. Mol.Cell (2009)

Release Date

2009-09-08

Peptides

ATP-dependent RNA helicase MSS116: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATP-dependent RNA helicase MSS116

Related Entries With Identical Sequence