SMTL ID : 3i78.1

35/99/170/186/220-loops of FXa in SGT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: Y.166, D.167, T.168, K.169, A.204, R.205, K.208 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.167

1 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 13 residues within 4Å: Chain A: D.172, T.173, C.174, Q.175, S.178, V.197, S.198, W.199, G.200, G.202, C.203, G.210 Ligands: SO4.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.197 Hydrogen bonds: A:D.172, A:T.173, A:G.202

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: H.42, Q.175, G.176, D.177, S.178 Ligands: BEN.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.176, A:D.177, A:S.178, A:S.178, A:S.178 Salt bridges: A:H.42 SO4.4: 1 residues within 4Å: Chain A: K.88 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.88 SO4.5: 3 residues within 4Å: Chain A: G.115, T.116, R.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.116 Salt bridges: A:R.184 SO4.6: 4 residues within 4Å: Chain A: Y.166, D.167, T.168, K.169 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.167, A:T.168, A:T.168, A:K.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Page, M.J. et al., Combinatorial Enzyme Design Probes Allostery and Cooperativity in the Trypsin Fold. J.Mol.Biol. (2010)

Release Date

2010-06-02

Peptides

Trypsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Trypsin