SMTL ID : 3i7v.1 (1 other biounit)

Crystal structure of AP4A hydrolase complexed with AP4A (ATP) (aq_158) from Aquifex aeolicus Vf5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 11 residues within 4Å: Chain A: S.6, K.31, G.32, N.33, I.65, Y.67, Y.69, K.78, Y.115, D.118 Ligands: EDO.4 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.6, A:S.6, A:K.31, A:Y.67, A:Y.115, A:D.118 Water bridges: A:S.24, A:E.51, A:Y.115, A:G.117 Salt bridges: A:K.31, A:K.31, A:K.31, A:K.78, A:K.78, A:K.78 pi-Stacking: A:Y.67, A:Y.67, A:Y.115, A:Y.115

1 x B4P: BIS(ADENOSINE)-5'-TETRAPHOSPHATE(Non-covalent)

B4P.2: 4 residues within 4Å: Chain A: M.1, K.2, K.3, F.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.3, A:K.3 Salt bridges: A:K.3, A:K.3, A:K.3 pi-Stacking: A:F.5

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: Y.67, W.68 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.68 EDO.4: 7 residues within 4Å: Chain A: S.28, K.31, I.65, Y.82, Y.115, D.118 Ligands: ATP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.28, A:Y.82 Water bridges: A:F.29, A:K.31 EDO.5: 1 residues within 4Å: Chain A: L.112 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeyakanthan, J. et al., Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5. Acta Crystallogr.,Sect.D (2010)

Release Date

2009-07-21

Peptides

AP4A hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP4A hydrolase

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