SMTL ID : 3iar.1

The crystal structure of human adenosine deaminase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x 3D1: (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol(Non-covalent)

3D1.1: 18 residues within 4Å: Chain A: H.12, H.14, D.16, F.58, L.59, F.62, Y.99, S.100, L.103, M.152, A.180, G.181, H.211, E.214, H.235, D.292, D.293 Ligands: NI.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.59, A:F.62 Hydrogen bonds: A:D.16, A:G.181, A:E.214 Water bridges: A:S.262 pi-Stacking: A:H.14, A:F.58, A:H.211

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 6 residues within 4Å: Chain A: H.12, H.14, H.211, H.235, D.292 Ligands: 3D1.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.12, A:H.14, A:H.211, A:D.292

2 x NO3: NITRATE ION(Non-functional Binders)

NO3.3: 5 residues within 4Å: Chain A: K.108, T.122, P.123, D.124, K.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.108, A:D.124 Water bridges: A:K.108 NO3.4: 7 residues within 4Å: Chain A: P.2, F.4, D.5, K.8, K.89, E.90, D.302 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.4, A:D.5, A:K.8 Water bridges: A:A.3, A:D.302, A:D.302

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: L.103, P.113, W.114, H.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.114 Water bridges: A:N.115, A:H.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ugochukwu, E. et al., The crystal structure of human adenosine deaminase. To be Published

Release Date

2009-08-11

Peptides

Adenosine deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenosine deaminase