SMTL ID : 3ibs.1

Crystal structure of conserved hypothetical protein BatB from Bacteroides thetaiotaomicron

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: K.36, L.40, N.199, Q.202 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain A: A.93, I.94, G.95, E.96, H.124 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: G.126, G.127, A.128, V.129 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: V.173, R.175 Chain B: N.170 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: N.170 Chain B: V.173, R.175 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: N.22, R.164, I.172 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: K.36, L.40, R.43, Q.202 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain B: A.93, I.94, G.95, E.96, H.124 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: G.126, G.127, A.128, V.129, E.130 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 3 residues within 4Å: Chain A: S.21, S.23, D.120 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.21, A:S.23, H2O.4, H2O.6, H2O.9, H2O.15 MG.13: 2 residues within 4Å: Chain B: S.21, S.23 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:S.21, B:S.23, H2O.68, H2O.69, H2O.70, H2O.73

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 3 residues within 4Å: Chain B: T.64, L.100, R.103 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.64, B:T.64, B:R.103 Water bridges: B:T.64 GOL.8: 4 residues within 4Å: Chain B: N.177, G.179, M.180, E.183 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.177, B:N.177 Water bridges: B:E.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hattne, J. et al., Crystal structure of conserved hypothetical protein BatB from Bacteroides thetaiotaomicron. To be Published

Release Date

2009-08-25

Peptides

conserved hypothetical protein BatB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

conserved hypothetical protein BatB