SMTL ID : 3icc.1

Crystal structure of a putative 3-oxoacyl-(acyl carrier protein) reductase from Bacillus anthracis at 1.87 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-tetramer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: F.60, S.61 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: G.18, R.21, D.197 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain B: Q.53, S.58, A.59 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: G.18 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain C: F.60, S.61 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain C: G.18, R.21, D.197 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain D: Q.53, S.58, A.59 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain D: G.18 Ligand excluded by PLIP

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.3: 31 residues within 4Å: Chain A: G.14, A.15, S.16, R.17, G.18, I.19, H.37, Y.38, G.39, N.40, A.64, L.66, E.67, N.98, A.99, G.100, I.101, V.121, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, F.193, V.194, T.196, M.198, N.199 Ligands: SO4.5 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:P.191 Hydrogen bonds: A:S.16, A:S.16, A:R.17, A:I.19, A:G.39, A:N.40, A:L.66, A:E.67, A:G.100, A:K.165, A:V.194, A:N.199, A:N.199 Water bridges: A:G.20, A:G.20, A:N.98, A:N.98, A:N.98, A:N.98, A:Y.161, A:T.196 Salt bridges: A:R.17 NAP.8: 31 residues within 4Å: Chain B: G.14, A.15, S.16, R.17, G.18, I.19, H.37, Y.38, G.39, N.40, R.41, A.64, N.65, L.66, E.67, N.98, A.99, G.100, I.101, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, F.193, V.194, T.196, M.198, N.199 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:P.191 Hydrogen bonds: B:G.14, B:S.16, B:S.16, B:S.16, B:R.17, B:I.19, B:G.39, B:N.40, B:R.41, B:N.65, B:L.66, B:E.67, B:N.98, B:G.100, B:Y.161, B:K.165, B:V.194, B:V.194, B:D.197, B:N.199 Water bridges: B:R.17, B:R.17, B:R.17, B:G.20, B:N.98 Salt bridges: B:R.17, B:R.17 NAP.13: 31 residues within 4Å: Chain C: G.14, A.15, S.16, R.17, G.18, I.19, H.37, Y.38, G.39, N.40, A.64, L.66, E.67, N.98, A.99, G.100, I.101, V.121, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, F.193, V.194, T.196, M.198, N.199 Ligands: SO4.15 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:P.191 Hydrogen bonds: C:S.16, C:S.16, C:R.17, C:I.19, C:G.39, C:N.40, C:L.66, C:E.67, C:E.67, C:G.100, C:Y.161, C:K.165, C:V.194, C:N.199, C:N.199 Water bridges: C:G.20, C:G.20, C:N.98, C:N.98, C:T.196, C:T.196 Salt bridges: C:R.17 NAP.18: 31 residues within 4Å: Chain D: G.14, A.15, S.16, R.17, G.18, I.19, H.37, Y.38, G.39, N.40, R.41, A.64, N.65, L.66, E.67, N.98, A.99, G.100, I.101, I.146, S.147, S.148, Y.161, K.165, P.191, G.192, F.193, V.194, T.196, M.198, N.199 28 PLIP interactions: 28 interactions with chain D Hydrophobic interactions: D:P.191 Hydrogen bonds: D:G.14, D:S.16, D:S.16, D:S.16, D:R.17, D:I.19, D:G.39, D:N.40, D:R.41, D:N.65, D:L.66, D:E.67, D:N.98, D:G.100, D:K.165, D:V.194, D:V.194, D:T.196, D:D.197, D:N.199 Water bridges: D:R.17, D:R.17, D:R.17, D:G.20, D:N.98 Salt bridges: D:R.17, D:R.17

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.138, D.139 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.139 SO4.5: 8 residues within 4Å: Chain A: G.14, A.15, S.16, R.17, Y.38, G.39, N.40 Ligands: NAP.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.16, A:S.16, A:S.16, A:G.39, A:N.40 Water bridges: A:R.17 Salt bridges: A:R.17 SO4.10: 3 residues within 4Å: Chain B: A.1, N.2, N.29 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.2, B:N.29, B:N.29 SO4.14: 2 residues within 4Å: Chain C: R.138, D.139 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.139 SO4.15: 8 residues within 4Å: Chain C: G.14, A.15, S.16, R.17, Y.38, G.39, N.40 Ligands: NAP.13 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:S.16, C:S.16, C:S.16, C:G.39, C:N.40 Water bridges: C:R.17 Salt bridges: C:R.17 SO4.20: 3 residues within 4Å: Chain D: A.1, N.2, N.29 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:A.1, D:N.2, D:N.29, D:N.29

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.9: 5 residues within 4Å: Chain B: N.40, R.41, K.42, E.43, E.44 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.42, B:E.43, B:E.44 MES.19: 5 residues within 4Å: Chain D: N.40, R.41, K.42, E.43, E.44 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.42, D:E.43, D:E.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, J. et al., Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis. Acta Crystallogr.,Sect.F (2012)

Release Date

2009-07-28

Peptides

Putative 3-oxoacyl-(acyl carrier protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Putative 3-oxoacyl-(acyl carrier protein) reductase