SMTL ID : 3id6.1

Crystal structure of Sulfolobus solfataricus Nop5 (1-262) and fibrillarin complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-2-2-mer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 14 residues within 4Å: Chain B: Y.82, G.84, A.85, A.86, T.90, E.108, F.109, S.110, A.132, D.133, A.134, D.153, I.154, Q.156 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.86 Hydrogen bonds: B:Y.82, B:T.90, B:F.109, B:D.133, B:A.134, B:R.135, B:Q.156 Salt bridges: B:D.153 SAM.2: 14 residues within 4Å: Chain D: Y.82, G.84, A.85, A.86, T.90, E.108, F.109, S.110, A.132, D.133, A.134, D.153, I.154, Q.156 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:A.86 Hydrogen bonds: D:Y.82, D:Y.82, D:T.90, D:F.109, D:D.133, D:D.133, D:A.134, D:R.135, D:D.153, D:Q.156 Salt bridges: D:D.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, K. et al., Structural organization of box C/D RNA-guided RNA methyltransferase. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-08-25

Peptides

Pre mRNA splicing protein: AC
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

Pre mRNA splicing protein

Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase

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